Comparative genomics: the bacterial pan-genome.
By Herve Tettelin, David R. Riley, Ciro Cattuto, Duccio Medini. Current Opinion in Microbiology, 2008
997 citations recorded by the source corpus.
Subfields: Molecular Biology, Plant Science
View Paper: https://www.semanticscholar.org/paper/4df427540ecf0683f659d84b300f499d62a8a5c1
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In Molecular Biology
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In Plant Science
Citations in the corpus
- EDGAR 2.0: an enhanced software platform for comparative gene content analyses (2016, positive): “in 2005 (1) and 2008 (10) and are now implemented in EDGAR 2.”
- GET_HOMOLOGUES, a Versatile Software Package for Scalable and Robust Microbial Pangenome Analysis (2013, background): “The sum of the core genome and the remaining genes within the group is defined as the pangenome (9).”
- Embracing the unknown: disentangling the complexities of the soil microbiome (2017, background): “Mobile genetic elements can lead to the rapid evolution of novel phenotypic traits and can contribute to closely related strains having highly dissimilar genomes 120 .”
- The Pangenome: Diversity, Dynamics and Evolution of Genomes (2020, background): “2This would have been mitigated a few years later by the introduction of an unbiased, random sampling adjustment (Tettelin et al. 2008).”
- Ecological Genomics of Marine Picocyanobacteria (2009, background): ““pan-genome” [288]) is probably several orders of magnitude”
- Bacterial insertion sequences: their genomic impact and diversity (2014, background): “The idea that many prokaryotic genomes are mosaic, composed of a ‘central genome backbone’ of essential and house-keeping genes (the core genome) interspersed with DNA segments constituting the ‘mobilome’ (a variety of accessory genes that form part of the pan genome), is now common currency (Medini”
- The Transcriptional Regulators of the CRP Family Regulate Different Essential Bacterial Functions and Can Be Inherited Vertically and Horizontally (2017, background): “In the analysis that we have presented in this work we have discusses that in several cases CRP-orthologs regulate the expression of genes that are fundamental to the biology of a bacterial species, and that the CRP target-genes are inherited by HGT, and are thus part of the accessory genome.”
- Mobility of Plasmids (2010, background): “Genetic information flows at high rates among prokaryotes, leading bacteria and archaea to have a small core genome that is conserved within a species and a large pangenome that is highly variable (137).”