GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways

By Kam D. Dahlquist, N. Salomonis, K. Vranizan, Steven C. Lawlor, Bruce R. Conklin. Nature Genetics, 2002

1,015 citations recorded by the source corpus.

Subfields: Clinical Psychology, General Health Professions

View Paper: https://www.semanticscholar.org/paper/3dc106dfb42019837d0ef90f6197b28d80fdf34f

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Citations in the corpus

Computational prediction of human metabolic pathways from the complete human genome (2004, methodology): “Related databases of human metabolic pathways include the GenMAPP [25] collection of 14 drawings of human metabolic pathways that are available through the web; the KEGG [26] metabolic pathway website, which allows coloring of a set of reference pathway maps to indicate which enzymatic steps have…”
The Aedes aegypti Toll Pathway Controls Dengue Virus Infection (2008, methodology): “Toll and Imd signaling pathways were built on the basis of a recent bioinformatics prediction [17] with GeneMAPP2 software [39].”
Ecotoxicogenomics: Emerging Technologies for Emerging Contaminants 1 (2009, methodology): “…the biological outcomes of a chemical exposure is through Pathway Mapping using pathway databases such as Kyoto Encyclopedia of Genes and Genomes (http://www. genome.jp/kegg/) (Ogata et al., 1999) and Gene Map Annotator and Pathway Profiler (http://www.gen mapp.org) (Dahlquist et al., 2002).”
Human protein reference database—2006 update (2005, methodology): “The pathway data are diagrammatically represented using GenMAPP (Gene Microarray Pathway Profiler) (14), a computer application designed for viewing and analyzing the data in the context of biological pathways (Figure 2).”
A module map showing conditional activity of expression modules in cancer (2004, background): “and genes belonging to the same functional category or pathwa”
Improved human disease candidate gene prioritization using mouse phenotype (2007, methodology): “Pathway: Gene-pathway annotations were compiled by combining data from KEGG [35], BioCarta [36], BioCyc [37], Reactome [38], GenMAPP [39], and MSigDb [40,3].”
NetAffx: Affymetrix probesets and annotations (2003, methodology): “uk/interpro) and GenMAPP (5) (http://www.”
Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges (2012, neutral): “org) [11,71]”
Pathways to the analysis of microarray data. (2005, background): “GenMAPP [ 18 ] (http://www.genmapp.org) provides an image of a pathway that is annotated with accession numbers (Figure 1c).”
Mapping complex disease loci in whole-genome association studies (2004, neutral): “However, identifying interacting genes requires improved bioinformatics tools to expertly annotate known pathways of physical interactio”