Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry

By David K. M. Han, Jimmy K. Eng, Huilin Zhou, R. Aebersold. Nature Biotechnology, 2001

829 citations recorded by the source corpus.

Subfields: Molecular Biology, Spectroscopy

View Paper: https://www.semanticscholar.org/paper/35e197c826dbf25c7f56ad70c62199f7a8c24b0d

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Citations in the corpus

TOPP - the OpenMS proteomics pipeline (2007, methodology): “Among these tools are PeptideProphet (Keller et al., 2005) which validates peptides assigned to MS/MS spectra, XPRESS (Han et al., 2001) and ASAPRatio (Li et al., 2003) that quantify peptides and proteins in differentially labeled samples.”
Stable Isotope Labeling by Amino Acids in Cell Culture, SILAC, as a Simple and Accurate Approach to Expression Proteomics* (2002, background): “of problems such as the quantification of microsomal proteins in differentiated versus undifferentiated HL-60 cells (19).”
A Guided Tour of the Trans-Proteomic Pipeline (2010, methodology): “Within this workflow, the quantification analysis tools XPRESS [17], ASAPRatio [18], or Libra [19] may be used with data that derive from isotopically or isobarically labeled samples.”
Integrated Genomic and Proteomic Analyses of Gene Expression in Mammalian Cells*S (2004, methodology): “Each cation exchange fraction was purified over monomeric avidin cartridge (Applied Biosystems) and analyzed by LC-MS/MS as described previously (10).”
Mass spectrometry–based proteomics turns quantitative (2005, methodology): “Several open-source software packages help in the determination of these ratios, in either a completely automated proces”
A method for the comprehensive proteomic analysis of membrane proteins (2003, methodology): “Three different shotgun methods have been applied recently to analyze enriched membrane fractions using detergent”
Comparing protein abundance and mRNA expression levels on a genomic scale (2003, background): “The largest number of proteins profiled so far using this approach with a single sample are the 491 proteins contained in microsomal fractions of naive and in vitro differentiated human myeloid leukemia cells [ 18 ].”
Complementary Profiling of Gene Expression at the Transcriptome and Proteome Levels in Saccharomyces cerevisiae*S (2002, methodology): “The final results were summarized using the software tool INTERACT (31).”