Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis.
By Xiaoyu Zhang, J. Yazaki, Ambika Sundaresan, Shawn Cokus, S. Chan, Huaming Chen, Ian R. Henderson, Paul Shinn, Matteo Pellegrini, Steven E. Jacobsen and 1 more. Cell, 2006
1,820 citations recorded by the source corpus.
Subfields: Molecular Biology, Plant Science
View Paper: https://www.semanticscholar.org/paper/2801a07c84c45ff20d25c05c07fa69c526668ea0
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In Molecular Biology
- Manel Esteller
- Jian‐Kang Zhu
- A. Bird
- M. Ashraf
- Alexander Meissner
- Peter W. Laird
- Peter A. Jones
- Yi Zhang
In Plant Science
- Jian‐Kang Zhu
- M. Ashraf
- Viswanathan Chinnusamy
- Ramanjulu Sunkar
- Kazuo Shinozaki
- N. Akram
- Steven E. Jacobsen
- A. Bird
Citations in the corpus
- The mammalian epigenome. (2007, methodology): “thaliana tiling array in the first complete highresolution analysis of a DNA methylome (Zhang et al., 2006).”
- Active DNA Demethylation Mediated by DNA Glycosylases (2009, positive): “60) or 5-meC immunoprecipitation coupled with tiling array analysis (111).”
- CpG islands and the regulation of transcription. (2011, positive): “2003), despite the presence of gene body methylation in these organisms (Zhang et al. 2006; Zilberman et al. 2007).”
- Epigenetic regulation of stress responses in plants. (2009, methodology): “The precipitated DNA is then analyzed by PCR or wholegenome tiling microarrays [53,54].”
- The Physiological, Biochemical and Molecular Roles of Brassinosteroids and Salicylic Acid in Plant Processes and Salt Tolerance (2010, background): “For example, most studies suggest that spraying during early vegetative growth is more effective than spraying at later stages ( Zhang et al. , 2006 ; Ashraf and Foolad, 2007 ; Ali et al.”
- Integrative epigenomic mapping defines four main chromatin states in Arabidopsis (2011, methodology): “Shannon entropy for each set of marked genes was calculated as described (Zhang et al, 2006) using publicly available developmental expression series (Schmid et al, 2005), after filtering genes that showed no expression in any conditions.”
- A Novel CpG Island Set Identifies Tissue-Specific Methylation at Developmental Gene Loci (2008, background): “While it will ultimately be important to know in detail the methylation status of whole genomes, this currently represents a technical challenge that has been addressed only for the small-genomed plant Arabidopsis [33,34].”
- Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription (2007, result): “We also obtained similar results by analyzing methylation mapping data from a recent stud”
- Principles and challenges of genome-wide DNA methylation analysis (2010, background): “However, CpG DNA methylation is increased in the gene bodies of actively transcribed genes in plant”
- Cancer epigenomics: DNA methylomes and histone-modification maps (2007, methodology): “In Arabidopsis thaliana , the combination of the methyl-DIP strategy with the affinity purification of methylated DNA using the methylcytosine-binding domain of the human methy-CpG-binding protein ( MeCP2 ) has provided the first comprehensive DNA-methylation map of an entire genome at 35-bp resolu”
- Involvement of DNA methylation in tree development and micropropagation (2007, background): “Clusters of CpG dinucleotides, called CpG islands, are often found in association with genes, most often in the promoters and first exons, but also in regions more toward the 30 end (Zhang et al. 2006).”
- DNA methylation landscapes: provocative insights from epigenomics (2008, result): “A comparison between these enrichment methods indicated that they give comparable result”