Phylogeography of Asian wild rice, Oryza rufipogon, reveals multiple independent domestications of cultivated rice, Oryza sativa.

By J. Londo, Y. Chiang, Kuo-Hsiang Hung, T. Chiang, B. Schaal. Proceedings of the National Academy of Sciences of the United States of America, 2006

661 citations recorded by the source corpus.

Subfields: Genetics, Plant Science

View Paper: https://www.semanticscholar.org/paper/276fccb6a8eef95fdb72a3055782fb183c9607e4

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The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Genetics

1. G. Eizenga
2. D. Fuller
3. M. Thomson
4. A. McClung
5. Bruce D. Smith
6. T. Tai
7. Susan McCouch
8. Joe Tohme

In Plant Science

1. G. Eizenga
2. D. Fuller
3. M. Thomson
4. A. McClung
5. Bruce D. Smith
6. T. Tai
7. Susan McCouch
8. Joe Tohme

Citations in the corpus

• Water management and labour in the origins and dispersal of Asian rice (2009, neutral): “(Cheng et al. 2003; Garris et al. 2005; Londo et al. 2006; Vaughan et al. 2008).”
• Contrasting Patterns in Crop Domestication and Domestication Rates: Recent Archaeobotanical Insights from the Old World (2007, background): “Genetic studies are now numerous in support of these separate origins (e.g. Chen et al., 1993; Cheng et al., 2003; Londo et al., 2006).”
• Development of a Research Platform for Dissecting Phenotype–Genotype Associations in Rice (Oryza spp.) (2010, methodology): “Molecular marker-based analysis has also been used to characterize the population structure of O. rufipogon and relate it to geographic and ecological differentiation (Liu et al. 2007; Londo et al. 2006; Vaughan et al. 2008; Wang et al. 2008).”
• Presumed domestication? Evidence for wild rice cultivation and domestication in the fifth millennium BC of the Lower Yangtze region (2007, background): “Indeed, the most comprehensive study to date indicates two separate domestication events for japonica rice, in the South China region, and two domestications of indica rices in South Asia or western Southeast Asia (Londo et al. 2006).”
• Human dispersal across diverse environments of Asia during the Upper Pleistocene (2013, background): “, the Movius Line, Movius, 1948) and domestic crop/animal traits (Londo et al., 2006; Fuller, 2007; Larson et al., 2010) that are or have also been differentiated across the Brahmaputra/Burma boundary, suggests that it has long constituted one of the most significant terrestrial biogeographic barrie”
• COLD1 confers chilling tolerance in rice. (2015, positive): “Our findings are consistent with archaeological and genetic evidence that japonica rice was domesticated in China (Fuller et al., 2009; Huang et al., 2012; Londo et al., 2006; Xu et al., 2012).”
• Pathways to Asian Civilizations: Tracing the Origins and Spread of Rice and Rice Cultures (2011, background): “from various modern genetic markers, from old-fashioned crossing to re-sequenced genomes (e.g. Garris et al. 2005; Londo et al. 2006; Kawakami et al. 2007; He et al. 2011).”
• The emergence of agriculture in southern China (2010, background): “…is widely regarded by archaeologists, palaeobotanists and plant geneticists as the location of the earliest cultivation of Asian rice (Oryza sativa var. japonica) (Crawford & Chen 1998; Higham & Lu 1998; Zhao 1998; Bellwood 2005: 111; Jiang & Liu 2006; Londo et al. 2006; Fuller et al. 2007, 2009).”
• The molecular genetics of crop domestication. (2006, background): “For example, a recent analysis of DNAsequence data has confirmed that indica and japonica are the products of separate domestication events, the former south of the Himalaya and the latter in southern China (Londo et al., 2006).”
• The Puzzle of Rice Domestication (2007, background): “A recent phylogeographic study of 203 cultivars and 129 wild accessions suggested that indica was domesticated within a region south of the Himalayan mountain range, including eastern India, Myanmar, and Thailand, whereas japonica may have originated from southern China (Londo et al. 2006).”
• Comprehending crystalline β-carotene accumulation by comparing engineered cell models and the natural carotenoid-rich system of citrus (2011, neutral): “However, the maintenance of genomic imprinting in self-fertilizing species might also be an evolutionary remnant of their recent outcrossing past, dating back only about 9000 years in rice (Li et al., 2006; Londo et al., 2006) and 400000 years in A.”
• Finding Plant Domestication in the Indian Subcontinent (2011, background): “Numerous data sets and studies indicate wide genetic divergence between modern indica and japonica cultivars (e.g., Bautista et al. 2001; Caicedo et al. 2007; Cheng et al. 2003; Garris et al. 2005; Londo et al. 2006; Takahashi, Sato, and Nakamura 2008; Tang et al. 2004; Vitte et al. 2004).”
• Through the genetic bottleneck: O. rufipogon as a source of trait-enhancing alleles for O. sativa (2007, background): “There is recent evidence that the ancestry of the indica and japonica subgroups of O. sativa can be traced to specific geographically-defined O. rufipogon populations (Cheng et al. 2003; Edwards 2005; Londo et al. 2006 ).”