Novel and Stress-Regulated MicroRNAs and Other Small RNAs from Arabidopsis

By Ramanjulu Sunkar, Jian‐Kang Zhu. The Plant Cell Online, 2004

1,965 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/23ddc62c027deea727462df2b36082a10f724213

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Citations in the corpus

Novel and Mechanical Stress–Responsive MicroRNAs in Populus trichocarpa That Are Absent from Arabidopsisw⃞ (2005, methodology): “Although PPRs were targets predicted for Arabidopsis miR400 (Sunkar and Zhu, 2004), the multiple target sites in multiple PPRs have not been reported previously.”
MicroRNA Directs mRNA Cleavage of the Transcription Factor NAC1 to Downregulate Auxin Signals for Arabidopsis Lateral Root Development (2005, background): “Expression of miR393 and miR159 has been shown to be regulated by abscisic acid (Sunkar and Zhu, 2004) and gibberellin (Achard et al., 2004), respectively.”
PHO2, MicroRNA399, and PHR1 Define a Phosphate-Signaling Pathway in Plants1[W][OA] (2006, background): “Vol. 141, 2006 991 miR393a, which was reported to respond to abiotic stresses (Sunkar and Zhu, 2004), or the levels of four PTs for miRNAs with developmental functions (Dugas and Bartel, 2004). miR395a is induced by sulfur starvation (Jones-Rhoades and Bartel, 2004).”
Evolution and Functional Diversification of MIRNA Genes (2011, background): “The importance of miRNA-mediated regulation is evident by the severe pleiotropic phenotypes in miRNA-deficient mutants (Park et al., 2002; Reinhart et al., 2002; Jones-Rhoades and Bartel, 2004; Sunkar and Zhu, 2004; Flynt and Lai, 2008).”
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. (2006, background): “Conventional cloning and sequencing of small RNAs from Arabidopsis has suggested that plants have a remarkable diversity of endogenous small RNAs (Llave et al. 2002; Park et al. 2002; Reinhart et al. 2002; Sunkar and Zhu 2004; Xie et al. 2004).”
Elucidating the molecular mechanisms mediating plant salt-stress responses. (2018, background): “The miRNAs miR393, miR397b, and miR402 are induced by salt stress in Arabidopsis (Sunkar & Zhu, 2004).”
Conservation and divergence of plant microRNA genes. (2006, background): “, 2005) and environmental stress (Jones-Rhoades and Bartel, 2004; Sunkar and Zhu, 2004; Zhang et al., 2005).”
Functions of microRNAs and related small RNAs in plants (2006, background): “It also will be of particular interest to determine the roles of the cluster of PPR genes that are targeted by miR161, miR400 and TAS2-derived ta-siRNAs generated through the action of miR17”
MicroRNA-Directed Regulation of Arabidopsis AUXIN RESPONSE FACTOR17 Is Essential for Proper Development and Modulates Expression of Early Auxin Response Genesw⃞ (2005, background): “…miRNAs accumulate in response to sulfur starvation (JonesRhoades and Bartel, 2004), abiotic stresses (Sunkar and Zhu, 2004), or phytohormones (Achard et al., 2004; Sunkar and Zhu, 2004), suggesting that miRNAs are important not only for development but also for responses to environmental stimuli.”
Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana (2010, positive): “Plants were grown for 2 weeks in ammonium as sole N source and were treated with 5 mM KNO3 or 5 mM KCl as control for 1, 2, and 4 h. Transcript levels for bHLH77, TIR1, AFB1, AFB2, and AFB3 were analyzed using real-time quantitative reverse transcription PCR (qRT-PCR).”
PsRobot: a web-based plant small RNA meta-analysis toolbox (2012, background): “Although the precursor structures of most canonical plant miRNAs are very short and well paired, there are still some with large bulge or hairpin loops, such as ath-MIR393a and ath-MIR167d (22,23).”
Genomic Organization, Differential Expression, and Interaction of SQUAMOSA Promoter-Binding-Like Transcription Factors and microRNA156 in Rice1[W] (2006, background): “Numerous miRNAs have recently been identified (Reinhart et al., 2002; Bonnet et al., 2004; Sunkar and Zhu, 2004; Sunkar et al., 2005).”
Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana. (2008, background): “However, a few of the miRNAs reported to be regulated by high salinity, drought, or cold stress were missed in our results, such as miR389 and miR400 (Sunkar and Zhu 2004).”
Epigenetic regulation of stress responses in plants. (2009, background): “Endogenous siRNAs that are regulated by abiotic stress have been identified in Arabidopsis [35].”
microRNA-directed phasing during trans-acting siRNA biogenesis in plants. (2005, background): “The E2-UBC target, which was also predicted by Sunkar and Zhu (2004), contains five potential miR399-interacting sites in the 5# untranslated region (UTR), although sites 2 and 3 appeared to be the predominant sites of miR399-guided cleavage (Figure 1B).”
A two-hit trigger for siRNA biogenesis in plants. (2006, positive): “Several repetitive pentatricopeptide repeat (PPR) genes have been predicted or validated as targets of miR161, miR400, and AtTAS1b-and AtTAS2-derived tasiRNAs (Rhoades et al., 2002; Allen et al., 2004, 2005; Sunkar and Zhu, 2004; Vazquez et al., 2004a).”