ElNémo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement

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Integrating protein structural dynamics and evolutionary analysis with Bio3D (2014, background): “As noted in the introduction, a number of previously implemented software solutions (including multiple web-servers [10-12,45] and standalone software packages [13-15,46]) offer single structure NMA or MD analysis.”
NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis (2006, background): “Some of the currently available web servers that implement elastic normal mode calculations include ElNemo (16) (http://igs-server.cnrs-mrs.fr/elnemo/), Webnm@ (17) (http:// www.bioinfo.no/tools/normalmodes), and AD-ENM (18) (http://enm.lobos.nih.gov/).”
Coarse-grained normal mode analysis in structural biology. (2005, methodology): “Several such databases have been constructed, including iGNM [56], ProMode [57], ElNémo [58], WEBnm [59] and MolMovDB [60], which allow the user to browse precalculated data and/or submit structures for NMA.”
Global dynamics of proteins: bridging between structure and function. (2010, background): “Several servers are now available (1, 21, 48, 63, 64), which permit one to readily compute and visualize a range of collective motions; identify residues that play critical roles in mediating these cooperative movements; or take advantage of predicted modes for structure refinement, for improving do”