Erik Lindahl

Molecular Biology · 2000–2020

A researcher in the Science corpus: 16 papers; trusts 37 researchers and is trusted by 22 researchers here, as inferred from the citation graph.

Subfields

• Molecular Biology — 109 citations into it; #4,518 of 17,773 by trust here, #1,070 by citations
• Materials Chemistry — 60 citations into it; #3,357 of 11,513 by trust here, #1,912 by citations
• Structural Biology — 46 citations into it; #134 of 224 by trust here, #90 by citations
• Surfaces, Coatings and Films — 31 citations into it
• Computational Biology & Bioinformatics — 28 citations into it
• Atomic and Molecular Physics, and Optics — 25 citations into it; #1,484 of 7,135 by trust here, #904 by citations
• Spectroscopy — 12 citations into it; #230 of 1,674 by trust here, #67 by citations
• Condensed Matter Physics — 9 citations into it

Whom Erik Lindahl trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Björn Wallner
2. John Moult
3. Arne Elofsson
4. Sjors H. W. Scheres
5. Andriy Kryshtafovych
6. Krzysztof Fidelis
7. David C. Jones
8. Marc Delarue
9. Ivet Bahar
10. R. Lehoucq

Who trusts Erik Lindahl overall

1. Bernard O. Offmann
2. Eric J. Sorin
3. C. Hetényi
4. Riviera Maya
5. Dariya S. Glazer
6. Justin A. Lemkul
7. Björn Wallner
8. D. van der Spoel
9. I. Tsimpanogiannis
10. Greg L. Hura

Papers from Erik Lindahl's perspective

Ordered by how strongly the researchers Erik Lindahl trusts endorse each paper. Same corpus, a different order for every researcher.

1. Processing and analysis of CASP3 protein structure predictions
2. Can correct protein models be identified?
3. Basic local alignment search tool.
4. Errors in protein structures
5. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
6. SCOP: a structural classification of proteins database for the investigation of sequences and structures.
7. MODBASE: a database of annotated comparative protein structure models and associated resources
8. Comparative protein modelling by satisfaction of spatial restraints.
9. Protein secondary structure prediction based on position-specific scoring matrices.
10. MaxSub: an automated measure for the assessment of protein structure prediction quality

Their papers

• Using multiple templates to improve quality of homology models in automated homology modeling (2008) — 159 citations
• GROMACS: Fast, flexible, and free (2005) — 17,374 citations
• GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation. (2008) — 15,253 citations
• GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers (2015) — 23,273 citations
• Prediction of membrane-protein topology from first principles (2008) — 318 citations
• Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2 (2016) — 972 citations
• Characterisation of molecular motions in cryo-EM single-particle data by multi-body refinement in RELION (2018) — 424 citations
• GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit (2013) — 7,077 citations
• Implementation of the CHARMM Force Field in GROMACS: Analysis of Protein Stability Effects from Correction Maps, Virtual Interaction Sites, and Water Models. (2010) — 1,166 citations
• NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis (2006) — 319 citations
• Spatial and energetic-entropic decomposition of surface tension in lipid bilayers from molecular dynamics simulations (2000) — 227 citations
• New tools for automated high-resolution cryo-EM structure determination in RELION-3 (2018) — 4,245 citations
• Heterogeneous Parallelization and Acceleration of Molecular Dynamics Simulations in GROMACS (2020) — 790 citations
• Tackling Exascale Software Challenges in Molecular Dynamics Simulations with GROMACS (2015) — 921 citations
• Improved model quality assessment using ProQ2 (2012) — 193 citations
• GROMACS 3.0: a package for molecular simulation and trajectory analysis (2001) — 6,280 citations