Summer B. Thyme
Molecular Biology · 2009–2020
A researcher in the Science corpus: 7 papers; trusts 12 researchers and is trusted by 3 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 363 citations into it; #10,798 of 17,773 by trust here, #7,496 by citations
- Materials Chemistry — 143 citations into it
- Computational Biology & Bioinformatics — 36 citations into it
- Spectroscopy — 32 citations into it
Whom Summer B. Thyme trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Colin A. Smith
- Justin Ashworth
- David Baker
- S. Parasuraman
- Jianhua Lin
- Tanja Kortemme
- Andrew Leaver-Fay
- Elizabeth H. Kellogg
- James J. Havranek
- Gregory K. Taylor
Who trusts Summer B. Thyme overall
- I. Samish
- Yifan Song
- David Baker
- Justin Ashworth
- Sandrine J. S. Boissel
- T. Brunette
- S. Quadri
- Lara Kusak
- M. Szeto
Papers from Summer B. Thyme's perspective
Ordered by how strongly the researchers Summer B. Thyme trusts endorse each paper. Same corpus, a different order for every researcher.
- Backrub-like backbone simulation recapitulates natural protein conformational variability and improves mutant side-chain prediction.
- RNA-Guided Human Genome Engineering via Cas9
- WebLogo: a sequence logo generator.
- Predicting protein structures with a multiplayer online game
- CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
- A TALE nuclease architecture for efficient genome editing (Nature Biotechnology)
- Computational reprogramming of homing endonuclease specificity at multiple adjacent base pairs
- High resolution comparative modeling with RosettaCM
- Role of conformational sampling in computing mutation-induced changes in protein structure and stability
- Modeling T cell receptor recognition of CD1-lipid and MR1-metabolite complexes
Their papers
- Macromolecular modeling and design in Rosetta: recent methods and frameworks (2020) — 783 citations
- Exploitation of binding energy for catalysis and design (2009) — 106 citations
- Improved Modeling of Side-Chain–Base Interactions and Plasticity in Protein–DNA Interface Design (2012) — 23 citations
- Reprogramming homing endonuclease specificity through computational design and directed evolution (2013) — 39 citations
- Efficient Mutagenesis by Cas9 Protein-Mediated Oligonucleotide Insertion and Large-Scale Assessment of Single-Guide RNAs (2014) — 873 citations
- CHOPCHOP v2: a web tool for the next generation of CRISPR genome engineering (2016) — 860 citations
- Massively parallel determination and modeling of endonuclease substrate specificity (2014) — 14 citations