James J. Havranek
Molecular Biology · 2003–2013
A researcher in the Science corpus: 8 papers; trusts 6 researchers and is trusted by 22 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 112 citations into it; #1,587 of 17,773 by trust here, #1,460 by citations
- Materials Chemistry — 69 citations into it; #1,770 of 11,513 by trust here, #4,123 by citations
- Computational Biology & Bioinformatics — 20 citations into it
Whom James J. Havranek trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Stephen L. Mayo
- Stephen F. Altschul
- Brian Kuhlman
- David Baker
- Roland L. Dunbrack
- Sarah A. Teichmann
- Zbyszek Otwinowski
- Justin Ashworth
- Adrian A. Canutescu
Who trusts James J. Havranek overall
- Andrew Leaver-Fay
- Ron Jacak
- Po-Ssu Huang
- I. Samish
- Justin Ashworth
- Summer B. Thyme
- Brian Kuhlman
- David Baker
- Tanja Kortemme
- Stephen L. Mayo
Papers from James J. Havranek's perspective
Ordered by how strongly the researchers James J. Havranek trusts endorse each paper. Same corpus, a different order for every researcher.
- De novo protein design: fully automated sequence selection.
- Basic local alignment search tool.
- Computational redesign of protein-protein interaction specificity (Nature Structural &Molecular Biology)
- Effective energy function for proteins in solution
- Alternate states of proteins revealed by detailed energy landscape mapping
- NMRPipe: A multidimensional spectral processing system based on UNIX pipes
- Native protein sequences are close to optimal for their structures.
- Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.
- Macromolecular modeling with rosetta.
- [20] Processing of X-ray diffraction data collected in oscillation mode.
Their papers
- Rosetta3: An Object-Oriented Software Suite for the Simulation and Design of Macromolecules (2011) — 1,780 citations
- Scientific Benchmarks for Guiding Macromolecular Energy Function Improvement (2013) — 199 citations
- Serverification of Molecular Modeling Applications: The Rosetta Online Server That Includes Everyone (ROSIE) (2013) — 417 citations
- Automated design of specificity in molecular recognition (2003) — 327 citations
- High-resolution Structural and Thermodynamic Analysis of Extreme Stabilization of Human Procarboxypeptidase by Computational Protein Design (2007) — 90 citations
- Computational reprogramming of homing endonuclease specificity at multiple adjacent base pairs (2010) — 111 citations
- Exploitation of binding energy for catalysis and design (2009) — 106 citations
- Computational redesign of endonuclease DNA binding and cleavage specificity (2006) — 78 citations