Oleksandr Kalyuzhniy
Molecular Biology · 2010–2018
A researcher in the Science corpus: 7 papers; trusts 3 researchers and is trusted by 0 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 71 citations into it
- Materials Chemistry — 36 citations into it
Whom Oleksandr Kalyuzhniy trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Rhiju Das
- Roland L. Dunbrack
- Robert J. Pantazes
- David Baker
- Michael D. Tyka
- Andrew Leaver-Fay
- Cyrus Chothia
- Maxim V. Shapovalov
- Colin A. Smith
- Adrian A. Canutescu
Papers from Oleksandr Kalyuzhniy's perspective
Ordered by how strongly the researchers Oleksandr Kalyuzhniy trusts endorse each paper. Same corpus, a different order for every researcher.
- Alternate states of proteins revealed by detailed energy landscape mapping
- Cyclic coordinate descent: A robotics algorithm for protein loop closure
- The Rosetta all-atom energy function for macromolecular modeling and design
- Canonical structures for the hypervariable regions of immunoglobulins.
- Backrub-like backbone simulation recapitulates natural protein conformational variability and improves mutant side-chain prediction.
- OptCDR: a general computational method for the design of antibody complementarity determining regions for targeted epitope binding.
- Sub-angstrom accuracy in protein loop reconstruction by robotics-inspired conformational sampling
- RosettaScripts: A Scripting Language Interface to the Rosetta Macromolecular Modeling Suite
- Computational design of antibody-affinity improvement beyond in vivo maturation (Nature Biotechnology)
- A new clustering of antibody CDR loop conformations
Their papers
- Rational HIV immunogen design to target specific germline B cell receptors (2013) — 697 citations
- Computational design of epitope-scaffolds allows induction of antibodies specific for a poorly immunogenic HIV vaccine epitope. (2010) — 223 citations
- Glycan-Masking Focuses Immune Responses to the HIV-1 CD4-Binding Site and Enhances Elicitation of VRC01-Class Precursor Antibodies (2018) — 140 citations
- RosettaAntibodyDesign (RAbD): A general framework for computational antibody design (2017) — 233 citations
- Precursor Frequency and Affinity Determine B Cell Competitive Fitness in Germinal Centers, Tested with Germline-Targeting HIV Vaccine Immunogens (2017) — 313 citations
- Priming a broadly neutralizing antibody response to HIV-1 using a germline-targeting immunogen (2015) — 409 citations
- Proof of principle for epitope-focused vaccine design (2014) — 544 citations