David J. Arenillas

Molecular Biology · 2005–2017

A researcher in the Science corpus: 8 papers; trusts 5 researchers and is trusted by 1 researcher here, as inferred from the citation graph.

Subfields

• Molecular Biology — 104 citations into it; #16,899 of 17,773 by trust here, #3,351 by citations

Whom David J. Arenillas trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Timothy L. Bailey
2. Yoav Benjamini
3. Albin Sandelin
4. Jeremy Goecks

Who trusts David J. Arenillas overall

1. Aziz Khan

Papers from David J. Arenillas's perspective

Ordered by how strongly the researchers David J. Arenillas trusts endorse each paper. Same corpus, a different order for every researcher.

1. Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing (Nature Methods)
2. Mapping and quantifying mammalian transcriptomes by RNA-Seq (Nature Methods)
3. MEME Suite: tools for motif discovery and searching
4. DNA binding sites: representation and discovery
5. An improved map of conserved regulatory sites for Saccharomyces cerevisiae (BMC Bioinformatics)
6. DNA-binding specificities of human transcription factors.
7. Bioconductor: open software development for computational biology and bioinformatics (Genome Biology)
8. Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project (Science)
9. Controlling the false discovery rate: a practical and powerful approach to multiple testing
10. Diversity and Complexity in DNA Recognition by Transcription Factors

Their papers

• JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles (2009) — 641 citations
• JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles (2015) — 1,115 citations
• Global mapping of binding sites for Nrf2 identifies novel targets in cell survival response through ChIP-Seq profiling and network analysis (2010) — 783 citations
• JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles (2013) — 1,081 citations
• oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes (2005) — 394 citations
• JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework (2017) — 987 citations
• JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework (2017) — 952 citations
• oPOSSUM-3: Advanced Analysis of Regulatory Motif Over-Representation Across Genes or ChIP-Seq Datasets (2012) — 298 citations