JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

By Aziz Khan, Oriol Fornes, Arnaud Stigliani, Marius Gheorghe, Jaime Abraham Castro-Mondragón, R. van der Lee, Adrien Bessy, Jeanne Chèneby, Shubhada R. Kulkarni, Ge Tan and 9 more. Nucleic Acids Research, 2017

952 citations recorded by the source corpus.

JASPAR (

Subfields: Cancer Research

View Paper: https://www.semanticscholar.org/paper/2fdb4eeaa0c0ad849acb0e1ced538a9ecf79f5e6

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In Cancer Research

1. David Haussler
2. Kate R. Rosenbloom
3. Mark Diekhans

Citations in the corpus

• The UCSC Genome Browser database: 2019 update (2018, background): “Examples include cis-regulatory annotations created by JASPAR (3), ReMap (4), the Eukaryotic Promoter Database (5), ENCODE(6), the Ensembl regulatory build (7) and Brain and Roadmap Epigenomics (8), RNAs from FANTOM5 (9), Mouse Alleles from MGI (10), lncRNAs from LNCipedia (11), Cancer genomics (sho”
• ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments (2017, methodology): “The usefulness of ReMap is exemplified by the last release of the JASPAR database (25), for which ReMap ChIP-seq peaks were used to derive 45 new TF binding profiles that were incorporated in the 2018 release of the vertebrate CORE collection (Khan et al.”