Timothy Y. James

Molecular Biology · 2000–2018

A researcher in the Science corpus: 13 papers; trusts 1 researcher and is trusted by 1 researcher here, as inferred from the citation graph.

Subfields

• Molecular Biology — 93 citations into it
• Genetics — 22 citations into it
• Paleontology — 16 citations into it

Whom Timothy Y. James trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Michael P. Cummings
2. Hidetoshi Shimodaira

Who trusts Timothy Y. James overall

1. K. D. Hyde
2. S. Adl
3. Leho Tedersoo
4. Douglas C. Woodhams
5. T. Richards

Papers from Timothy Y. James's perspective

Ordered by how strongly the researchers Timothy Y. James trusts endorse each paper. Same corpus, a different order for every researcher.

1. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
2. An approximately unbiased test of phylogenetic tree selection. (Systematic Biology)
3. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.
4. PAUP* [Phylogenetic Analysis Using Parsimony (and Other Methods)]
5. Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans (Nature)
6. Molecular Evidence for the Early Colonization of Land by Fungi and Plants (Science)
7. MEGA2: molecular evolutionary genetics analysis software (Bioinform.)
8. Molecular biology and structure-function of lignin-degrading heme peroxidases
9. International Code of Nomenclature for algae, fungi, and plants (Melbourne Code)
10. Evidence of a chytrid fungus infection involved in the decline of the common midwife toad (Alytes obstetricans) in protected areas of central Spain

Their papers

• Reconstructing the early evolution of Fungi using a six-gene phylogeny (2006) — 1,796 citations
• The New Higher Level Classification of Eukaryotes with Emphasis on the Taxonomy of Protists (2005) — 1,713 citations
• Molecular phylogenetics of the Chytridiomycota supports the utility of ultrastructural data in chytrid systematics (2000) — 188 citations
• Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion (2009) — 609 citations
• Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes (2018) — 1,157 citations
• A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data (2016) — 1,087 citations
• Discovery of dark matter fungi in aquatic ecosystems demands a reappraisal of the phylogeny and ecology of zoosporic fungi (2016) — 211 citations
• 6 Mating Type in Basidiomycetes: Unipolar, Bipolar, and Tetrapolar Patterns of Sexuality (2011) — 107 citations
• The North American bullfrog as a reservoir for the spread of Batrachochytrium dendrobatidis in Brazil (2010) — 126 citations
• The fungi. (2009) — 786 citations
• Amphibian Pathogen Batrachochytrium dendrobatidis Is Inhibited by the Cutaneous Bacteria of Amphibian Species (2006) — 320 citations
• Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. (2004) — 821 citations
• One hundred and seventeen clades of euagarics. (2002) — 677 citations