Pieter C. Dorrestein
Molecular Biology · 2000–2023
A researcher in the Science corpus: 27 papers; trusts 3 researchers and is trusted by 0 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 479 citations into it
Whom Pieter C. Dorrestein trusts
Their strongest outbound trust, strongest first, inferred from their citations.
- Sean R. Eddy (in Molecular Biology)
- Rob Knight (in Molecular Biology)
- T. Jenuwein (in Molecular Biology)
Papers from Pieter C. Dorrestein's perspective
Ordered by how strongly the researchers Pieter C. Dorrestein trusts endorse each paper. Same corpus, a different order for every researcher.
- A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains (BMC Genomics)
- CFM-ID: a web server for annotation, spectrum prediction and metabolite identification from tandem mass spectra (Nucleic Acids Res.)
- Deep Learning
- Translating the Histone Code (Science)
- Regulation of chromatin structure by site-specific histone H3 methyltransferases (Nature)
- Dropout: a simple way to prevent neural networks from overfitting
- Random Forests
- HMMER web server: interactive sequence similarity searching
- QIIME allows analysis of high-throughput community sequencing data (Nature Methods)
- Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins (Nature)
Their papers
- Sharing and community curation of mass spectrometry data with GNPS (2016) — 3,861 citations
- Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 (2019) — 19,259 citations
- Mass spectral molecular networking of living microbial colonies (2012) — 885 citations
- Global chemical analysis of biology by mass spectrometry (2017) — 196 citations
- Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature. (2013) — 1,606 citations
- Best practices for analysing microbiomes (2018) — 1,565 citations
- Qiita: rapid, web-enabled microbiome meta-analysis (2018) — 578 citations
- American Gut: an Open Platform for Citizen Science Microbiome Research (2018) — 775 citations
- ncRNA- and Pc2 Methylation-Dependent Gene Relocation between Nuclear Structures Mediates Gene Activation Programs (2011) — 623 citations
- Illuminating the dark matter in metabolomics (2015) — 484 citations
- QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science (2018) — 1,189 citations
- Minimum Information about a Biosynthetic Gene cluster (2015) — 802 citations
- Microbiome-wide association studies link dynamic microbial consortia to disease (2016) — 665 citations
- NPClassifier: A Deep Neural Network-Based Structural Classification Tool for Natural Products (2020) — 431 citations
- Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra (2020) — 678 citations
- The Natural Products Atlas: An Open Access Knowledge Base for Microbial Natural Products Discovery (2019) — 353 citations
- SIRIUS 4: a rapid tool for turning tandem mass spectra into metabolite structure information (2019) — 1,658 citations
- Propagating annotations of molecular networks using in silico fragmentation (2018) — 299 citations
- MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools (2019) — 330 citations
- Integrative analysis of multimodal mass spectrometry data in MZmine 3 (2023) — 951 citations