The design, implementation, and evaluation of mpiBLAST

By Aaron E. Darling, Lucas B. Carey, Wu-chun Feng. 2003

463 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/1b65277f50406900a475a68856df8fe8835c19be

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

1. Klaus Reuter
2. Hajk-Georg Drost
3. Benjamin Buchfink
4. Maurício O. Tsugawa
5. José A. B. Fortes
6. Andréa M. Matsunaga
7. Martin Steinegger
8. Florian P. Breitwieser

Citations in the corpus

• CloudBLAST: Combining MapReduce and Virtualization on Distributed Resources for Bioinformatics Applications (2008, methodology): “To evaluate the scalability of mpiBLAST and CloudBLAST, experiments with different numbers of nodes, processors, database fragments and input data sets were executed.”
• Sensitive protein alignments at tree-of-life scale using DIAMOND (2021, methodology): “Unlike related work such as mpiBLAST 28 , our implementation does not use any special interprocess communication libraries, such as the message passing interface (MPI) specific to HPC environments, instead it relies on input–output operations supported by any POSIX-compliant parallel file system…”