Richard Bonneau
Molecular Biology · 1999–2023
A researcher in the Science corpus: 23 papers; trusts 50 researchers and is trusted by 15 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 639 citations into it; #2,738 of 17,773 by trust here, #1,344 by citations
- Materials Chemistry — 241 citations into it; #2,431 of 11,513 by trust here, #2,903 by citations
- Computational Biology & Bioinformatics — 141 citations into it
- Spectroscopy — 71 citations into it
- Computational Theory and Mathematics — 70 citations into it
- Artificial Intelligence — 68 citations into it
- Genetics — 44 citations into it
- Computer Vision and Pattern Recognition — 31 citations into it
Whom Richard Bonneau trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- David C. Jones
- K. Simons
- David Baker
- Tim J. P. Hubbard
- P. Bowers
- Robert Tibshirani
- Eric R. Ziegel
- Burkhard Rost
- John Moult
- Christopher Sander
Who trusts Richard Bonneau overall
- David Baker
- C. López‐Otín
- Santrupti Nerli
- Nicolas Le Novère
- Tanja Kortemme
- Michael Feig
- Namrata Anand-Achim
- Julia Koehler Leman
- Carol A. Rohl
- Bernard O. Offmann
Papers from Richard Bonneau's perspective
Ordered by how strongly the researchers Richard Bonneau trusts endorse each paper. Same corpus, a different order for every researcher.
- Adam: A Method for Stochastic Optimization (International Conference on Learning Representations)
- ImageNet classification with deep convolutional neural networks
- Attention is All you Need (Neural Information Processing Systems)
- Deep Residual Learning for Image Recognition (Computer Vision and Pattern Recognition)
- Regression Shrinkage and Selection via the Lasso
- The Protein Data Bank.
- Long Short-Term Memory
- Gradient-based learning applied to document recognition
- Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.
- Neural Machine Translation by Jointly Learning to Align and Translate (International Conference on Learning Representations)
Their papers
- The Rosetta all-atom energy function for macromolecular modeling and design (2017) — 1,486 citations
- Rosetta in CASP4: Progress in ab initio protein structure prediction (2001) — 316 citations
- Serverification of Molecular Modeling Applications: The Rosetta Online Server That Includes Everyone (ROSIE) (2013) — 417 citations
- Ab initio protein structure prediction: progress and prospects. (2001) — 337 citations
- Accurate de novo design of hyperstable constrained peptides (2016) — 389 citations
- Macromolecular modeling and design in Rosetta: recent methods and frameworks (2020) — 783 citations
- Computing structure-based lipid accessibility of membrane proteins with mp_lipid_acc in RosettaMP (2016) — 27 citations
- deepNF: deep network fusion for protein function prediction (2017) — 210 citations
- The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo (2006) — 572 citations
- Structure-based protein function prediction using graph convolutional networks (2021) — 926 citations
- High-definition spatial transcriptomics for in situ tissue profiling (2019) — 974 citations
- The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. (2012) — 1,214 citations
- Tweeting From Left to Right (2015) — 1,025 citations
- The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens (2019) — 434 citations
- Sparse and Compositionally Robust Inference of Microbial Ecological Networks (2014) — 1,531 citations
- OpenFold: retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization (2023) — 435 citations
- Function-guided protein design by deep manifold sampling (2021) — 35 citations
- Designing Peptides on a Quantum Computer (2019) — 58 citations
- Moderating with the Mob: Evaluating the Efficacy of Real-Time Crowdsourced Fact-Checking (2021)
- Better together: Elements of successful scientific software development in a distributed collaborative community (2020) — 37 citations