C. von Mering

Molecular Biology · 2002–2024

A researcher in the Science corpus: 39 papers; trusts 37 researchers and is trusted by 23 researchers here, as inferred from the citation graph.

Subfields

• Molecular Biology — 709 citations into it; #1,604 of 17,773 by trust here, #213 by citations
• Genetics — 158 citations into it
• Spectroscopy — 94 citations into it; #769 of 1,674 by trust here, #167 by citations
• Computational Theory and Mathematics — 80 citations into it; #8,515 of 12,182 by trust here, #596 by citations
• Computational Biology & Bioinformatics — 74 citations into it
• Plant Science — 55 citations into it
• Ecology — 48 citations into it; #10,317 of 10,717 by trust here, #778 by citations
• Evaluation & Benchmarks — 14 citations into it

Whom C. von Mering trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Minoru Kanehisa
2. Lars Juhl Jensen
3. Ivica Letunic
4. Peer Bork
5. Amos Bairoch
6. Martijn A. Huynen
7. Berend Snel
8. Susumu Goto
9. Eugene V. Koonin
10. Michael Kuhn

Who trusts C. von Mering overall

1. J. Walker
2. Lars Juhl Jensen
3. Damian Szklarczyk
4. Peer Bork
5. Ivica Letunic
6. Natasa Przulj
7. Michael Kuhn
8. Sara Mostafavi
9. Igor Jurisica
10. Kevin R. Brown

Papers from C. von Mering's perspective

Ordered by how strongly the researchers C. von Mering trusts endorse each paper. Same corpus, a different order for every researcher.

1. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
2. The Pfam protein families database
3. The COG database: an updated version includes eukaryotes
4. Basic local alignment search tool.
5. A genomic perspective on protein families.
6. Distinguishing homologous from analogous proteins.
7. Functional organization of the yeast proteome by systematic analysis of protein complexes (Nature)
8. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
9. From genomics to chemical genomics: new developments in KEGG (Nucleic Acids Res.)
10. SMART 5: domains in the context of genomes and networks (Nucleic Acids Res.)

Their papers

• Comparative Metagenomics of Microbial Communities (2004) — 1,618 citations
• STRING v10: protein–protein interaction networks, integrated over the tree of life (2014) — 9,777 citations
• Comparative assessment of large-scale data sets of protein–protein interactions (2002) — 2,514 citations
• The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible (2016) — 6,517 citations
• eggNOG v4.0: nested orthology inference across 3686 organisms (2013) — 618 citations
• eggNOG: automated construction and annotation of orthologous groups of genes (2007) — 560 citations
• STRING: known and predicted protein–protein associations, integrated and transferred across organisms (2004) — 1,723 citations
• The HUPO PSI's Molecular Interaction format—a community standard for the representation of protein interaction data (2004) — 687 citations
• The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored (2010) — 3,517 citations
• STRING 8—a global view on proteins and their functional interactions in 630 organisms (2008) — 2,563 citations
• STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets (2018) — 15,157 citations
• STRING: a database of predicted functional associations between proteins (2003) — 2,618 citations
• Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper (2016) — 2,475 citations
• STRING v9.1: protein-protein interaction networks, with increased coverage and integration (2012) — 4,385 citations
• Protein interaction networks from yeast to human. (2004) — 374 citations
• Standardised Benchmarking in the Quest for Orthologs (2016) — 213 citations
• A Phylogeny-Based Benchmarking Test for Orthology Inference Reveals the Limitations of Function-Based Validation (2014) — 20 citations
• eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences (2015) — 1,948 citations
• STRING 7—recent developments in the integration and prediction of protein interactions (2006) — 715 citations
• eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses (2018) — 4,095 citations