Todd J. Dolinsky
Molecular Biology · 2004–2017
A researcher in the Science corpus: 3 papers; trusts 1 researcher and is trusted by 2 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 25 citations into it; #13,972 of 17,773 by trust here, #8,381 by citations
Whom Todd J. Dolinsky trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Nathan A. Baker
- Rob W. W. Hooft
- Junmei Wang
- Alexander D. MacKerell
- David A. Case
- Christopher Sander
- S. Joseph
Who trusts Todd J. Dolinsky overall
- Sean R. McGuffee
- Ivan V. Anishchenko
- Mario S. Valdés-Tresanco
- Maria Greco
- Vignesh Ram Somnath
- Andrea Pasquadibisceglie
- Adrian H. Elcock
- Petras J. Kundrotas
- Mario E. Valdés-Tresanco
- A. Chiappetta
Papers from Todd J. Dolinsky's perspective
Ordered by how strongly the researchers Todd J. Dolinsky trusts endorse each paper. Same corpus, a different order for every researcher.
- The Amber biomolecular simulation programs
- VMD: visual molecular dynamics.
- AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility
- 3Dmol.js: molecular visualization with WebGL
- Generalized born models of macromolecular solvation effects. (Annual review of physical chemistry (Print))
- How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules? (Journal of Computational Chemistry)
- CHARMM: The biomolecular simulation program
- Extending the treatment of backbone energetics in protein force fields: Limitations of gas‐phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations
- Positioning hydrogen atoms by optimizing hydrogen‐bond networks in protein structures
- Scalable molecular dynamics with NAMD
Their papers
- PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations (2004) — 3,375 citations
- PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations (2007) — 1,956 citations
- Improvements to the APBS biomolecular solvation software suite (2017) — 2,172 citations