Petras J. Kundrotas
Molecular Biology · 2012–2021
A researcher in the Science corpus: 11 papers; trusts 38 researchers and is trusted by 16 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 278 citations into it; #2,869 of 17,773 by trust here, #4,299 by citations
- Materials Chemistry — 145 citations into it; #3,291 of 11,513 by trust here, #4,596 by citations
- Computational Biology & Bioinformatics — 116 citations into it
- Computational Theory and Mathematics — 61 citations into it; #6,754 of 12,182 by trust here, #1,017 by citations
- Spectroscopy — 21 citations into it; #1,046 of 1,674 by trust here, #1,529 by citations
- Evaluation & Benchmarks — 11 citations into it
Whom Petras J. Kundrotas trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Ilya A. Vakser
- Yang Zhang
- Marc F. Lensink
- John Moult
- Joël Janin
- Jeffrey Skolnick
- Patrick Aloy
- Shoshana J. Wodak
- Manfred J. Sippl
- Krzysztof Fidelis
Who trusts Petras J. Kundrotas overall
- Patrick Bryant
- Gabriele Pozzati
- Amar Singh
- András Szilágyi
- Ragul Gowthaman
- Tiziano Gallo Cassarino
- Jérôme Tubiana
- Marc F. Lensink
- Arne Elofsson
- Torsten Schwede
Papers from Petras J. Kundrotas's perspective
Ordered by how strongly the researchers Petras J. Kundrotas trusts endorse each paper. Same corpus, a different order for every researcher.
- TM-align: a protein structure alignment algorithm based on the TM-score
- Docking and scoring protein complexes: CAPRI 3rd Edition
- Optimization of affinity, specificity and function of designed influenza inhibitors using deep sequencing
- Prediction of homo- and hetero-protein complexes by protein docking and template-based modeling: a CASP-CAPRI experiment
- Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.
- Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS) (Nature Methods)
- Distance‐scaled, finite ideal‐gas reference state improves structure‐derived potentials of mean force for structure selection and stability prediction
- Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques.
- Statistical potential for assessment and prediction of protein structures
- Faculty Opinions recommendation of Accurate prediction of protein structures and interactions using a three-track neural network.
Their papers
- Prediction of homo- and hetero-protein complexes by protein docking and template-based modeling: a CASP-CAPRI experiment (2016) — 130 citations
- Templates are available to model nearly all complexes of structurally characterized proteins (2012) — 187 citations
- Towards a structurally resolved human protein interaction network (2021) — 210 citations
- Modeling complexes of modeled proteins (2017) — 27 citations
- A structural biology community assessment of AlphaFold2 applications (2021) — 578 citations
- Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment (2019) — 104 citations
- Dockground: A comprehensive data resource for modeling of protein complexes (2018) — 83 citations
- Contact Potential for Structure Prediction of Proteins and Protein Complexes from Potts Model. (2018) — 23 citations
- Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment (2021) — 103 citations
- Application of docking methodologies to modeled proteins (2020) — 35 citations
- Limits and potential of combined folding and docking (2021) — 18 citations