Michael Brudno
Molecular Biology · 2000–2018
A researcher in the Science corpus: 14 papers; trusts 8 researchers and is trusted by 29 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 155 citations into it; #1,656 of 17,773 by trust here, #858 by citations
- Artificial Intelligence — 22 citations into it
- Computational Biology & Bioinformatics — 17 citations into it
Whom Michael Brudno trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Anders Krogh
- Robert C. Edgar
- David C. Jones
- Burkhard Rost
- Christopher Sander
- Liisa Holm
- Steven Henikoff
- Mark Borodovsky
Who trusts Michael Brudno overall
- Kazutaka Katoh
- Aaron E. Darling
- Andreas Biegert
- Byung-Jun Yoon
- R. Pressat
- Jimin Pei
- Ivan Ovcharenko
- Benjamin P. Blackburne
- Todd J. Treangen
- Hiroyuki Toh
Papers from Michael Brudno's perspective
Ordered by how strongly the researchers Michael Brudno trusts endorse each paper. Same corpus, a different order for every researcher.
- Amino acid substitution matrices from protein blocks.
- Identification of common molecular subsequences.
- SCOP: a structural classification of proteins database for the investigation of sequences and structures.
- The Pfam protein families database
- Hidden Markov models in computational biology. Applications to protein modeling.
- CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
- MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.
- MUSCLE: multiple sequence alignment with high accuracy and high throughput.
- Progressive sequence alignment as a prerequisitetto correct phylogenetic trees
- Pfam: multiple sequence alignments and HMM-profiles of protein domains
Their papers
- ProbCons: Probabilistic consistency-based multiple sequence alignment. (2005) — 1,197 citations
- Genome sequence of the Brown Norway rat yields insights into mammalian evolution (2004) — 2,140 citations
- The ENCODE (ENCyclopedia Of DNA Elements) Project (2004) — 2,411 citations
- SHRiMP: Accurate Mapping of Short Color-space Reads (2009) — 635 citations
- Similarity network fusion for aggregating data types on a genomic scale (2014) — 1,802 citations
- The Genetic Landscape of a Cell (2010) — 2,188 citations
- Computational methods for discovering structural variation with next-generation sequencing (2009) — 596 citations
- The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data (2013) — 826 citations
- VISTA : visualizing global DNA sequence alignments of arbitrary length (2000) — 1,054 citations
- The Human Phenotype Ontology in 2017 (2016) — 742 citations
- Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources (2018) — 616 citations
- SHRiMP2: Sensitive yet Practical Short Read Mapping (2011) — 387 citations
- The Matchmaker Exchange: A Platform for Rare Disease Gene Discovery (2015) — 453 citations
- SnowFlock: rapid virtual machine cloning for cloud computing (2009) — 464 citations