UCSF Chimera—A visualization system for exploratory research and analysis

By Eric F. Pettersen, Thomas D. Goddard, Conrad C. Huang, Gregory S. Couch, Daniel M. Greenblatt, Elaine C. Meng, T. Ferrin. 2004

43,944 citations recorded by the source corpus.

Subfields: Information Systems and Management, Materials Chemistry, Molecular Biology, Computational Biology & Bioinformatics, Computational Chemistry & Drug Discovery

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Information Systems and Management

1. T. Ferrin
2. Maya Topf
3. Yang Zhang
4. K. Currie
5. Abdo A. Elfiky
6. Thomas D. Goddard
7. Conrad C. Huang
8. Eric F. Pettersen

In Materials Chemistry

1. Yang Zhang
2. Andrej Sali
3. Ben M. Webb
4. Jianlin Cheng
5. David Baker
6. Torsten Schwede
7. Jinbo Xu
8. Michael Feig

In Molecular Biology

1. Yang Zhang
2. Andrej Sali
3. Ben M. Webb
4. David Baker
5. Jianlin Cheng
6. Jinbo Xu
7. Torsten Schwede
8. Andriy Kryshtafovych

In Computational Biology & Bioinformatics

1. Yang Zhang
2. Jinbo Xu
3. Arne Elofsson
4. Jianlin Cheng
5. David Baker
6. Sergey Ovchinnikov
7. Michael Feig
8. Robin Pearce

In Computational Chemistry & Drug Discovery

1. Brian K. Shoichet
2. Yang Zhang
3. David Baker
4. Ryan G. Coleman
5. John J. Irwin
6. Abdo A. Elfiky
7. K. Currie
8. Michael Carchia

Citations in the corpus

• Molecular Docking and Structure-Based Drug Design Strategies (2015, neutral): “Program UCSF Chimera [193,194] VMD [195,196] Pymol [197,198] BALL [199,200] RasMol [201,202] Jmol [203] JSmol [204]”
• The RIG-I receptor adopts two different conformations for distinguishing host from viral RNA ligands (2022, neutral): “All the figures and movie were generated using PyMOL (http://www.pymol.org/) and Chimera (Pettersen et al., 2004).”
• Multi-State Modeling of G-protein Coupled Receptors at Experimental Accuracy (2021, methodology): “Ligand structures were generated from SMILES strings using UCSF Chimera.(48) The center of the docking search space was manually set at the canonical class A GPCR binding pocket.”
• Potent Neutralizing Antibodies against SARS-CoV-2 Identified by High-Throughput Single-Cell Sequencing of Convalescent Patients’ B Cells (2020, positive): “This BD23-Fab model and the S trimer structure (PDB ID: 6VSB) were docked into the cryo-EM density using UCSF Chimera.”
• High resolution microtubule structures reveal the structural transitions in αβ–tubulin upon GTP hydrolysis (2014, methodology): “Molecular Graphics All structural figures andmovies were generated with UCSFChimera (Goddard et al., 2007; Pettersen et al., 2004).”