Jens Nielsen

Molecular Biology · 2000–2021

A researcher in the Science corpus: 28 papers; trusts 39 researchers and is trusted by 34 researchers here, as inferred from the citation graph.

Subfields

Molecular Biology — 455 citations into it; #1,040 of 17,773 by trust here, #780 by citations
Genetics — 50 citations into it
Biomedical Engineering — 46 citations into it; #5,646 of 10,734 by trust here, #2,968 by citations
Computational Biology & Bioinformatics — 30 citations into it
Computational Theory and Mathematics — 21 citations into it
Control and Systems Engineering — 5 citations into it

Whom Jens Nielsen trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

Who trusts Jens Nielsen overall

Papers from Jens Nielsen's perspective

Ordered by how strongly the researchers Jens Nielsen trusts endorse each paper. Same corpus, a different order for every researcher.

Gene Ontology: tool for the unification of biology
Basic local alignment search tool.
Genome-scale microbial in silico models: the constraints-based approach. (Trends in Biotechnology)
Cytoscape: a software environment for integrated models of biomolecular interaction networks.
Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. (Genome Research)
Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective. (Journal of Theoretical Biology)
BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models
Uncovering transcriptional regulation of metabolism by using metabolic network topology. (Proceedings of the National Academy of Sciences of the United States of America)
Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. (Science)
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0 (Nature Protocols)

Their papers

Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. (2003) — 1,116 citations
Tissue-based map of the human proteome (2015) — 13,923 citations
Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods (2013) — 671 citations
Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network (2003) — 385 citations
Uncovering transcriptional regulation of metabolism by using metabolic network topology. (2005) — 662 citations
Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics. (2014) — 1,209 citations
A community-driven global reconstruction of human metabolism (2013) — 1,073 citations
Evolutionary programming as a platform for in silico metabolic engineering (2005) — 475 citations
Gut metagenome in European women with normal, impaired and diabetic glucose control (2013) — 2,909 citations
Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics* (2013) — 2,436 citations
A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae (2012) — 337 citations
The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum (2013) — 391 citations
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology (2008) — 617 citations
Reconstruction of Genome-Scale Active Metabolic Networks for 69 Human Cell Types and 16 Cancer Types Using INIT (2012) — 450 citations
Recon3D: A Resource Enabling A Three-Dimensional View of Gene Variation in Human Metabolism (2018) — 500 citations
Roux-en-Y Gastric Bypass and Vertical Banded Gastroplasty Induce Long-Term Changes on the Human Gut Microbiome Contributing to Fat Mass Regulation (2015) — 708 citations
Minimum Information about a Biosynthetic Gene cluster (2015) — 802 citations
A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism (2019) — 318 citations
RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor (2018) — 331 citations
An interlaboratory comparison of physiological and genetic properties of four Saccharomyces cerevisiae strains. (2000) — 600 citations