Ali Ebrahim
Molecular Biology · 2013–2015
A researcher in the Science corpus: 3 papers; trusts 12 researchers and is trusted by 1 researcher here, as inferred from the citation graph.
Subfields
- Molecular Biology — 58 citations into it; #17,562 of 17,773 by trust here, #10,695 by citations
- Biomedical Engineering — 10 citations into it
Whom Ali Ebrahim trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Jeffrey D. Orth
- Bernhard O. Palsson
- Adam M. Feist
- Radhakrishnan Mahadevan
- Kiran Raosaheb Patil
- Nathan E. Lewis
- Christopher S. Henry
- Jan Schellenberger
- Jens Nielsen
- Rasmus Agren
Who trusts Ali Ebrahim overall
Papers from Ali Ebrahim's perspective
Ordered by how strongly the researchers Ali Ebrahim trusts endorse each paper. Same corpus, a different order for every researcher.
- An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR) (Genome Biology)
- The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli (Nature Biotechnology)
- BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models
- Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0 (Nature Protocols)
- CellDesigner 3.5: A Versatile Modeling Tool for Biochemical Networks (Proceedings of the IEEE)
- The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models (Bioinform.)
- High-throughput generation, optimization and analysis of genome-scale metabolic models (Nature Biotechnology)
- The effects of alternate optimal solutions in constraint-based genome-scale metabolic models. (Metabolic Engineering)
- Reconstruction of Biochemical Networks in Microbial Organisms (Nature Reviews Microbiology)
- Towards multidimensional genome annotation (Nature reviews genetics)
Their papers
- BiGG Models: A platform for integrating, standardizing and sharing genome-scale models (2015) — 886 citations
- Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways (2015) — 369 citations
- COBRApy: COnstraints-Based Reconstruction and Analysis for Python (2013) — 1,250 citations