Barry Honig

Computational Biology & Bioinformatics · 2000–2012

A researcher in the Science corpus: 14 papers; trusts 2 researchers and is trusted by 25 researchers here, as inferred from the citation graph.

Subfields

• Computational Biology & Bioinformatics — 26 citations into it

Whom Barry Honig trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Andrej Sali

Who trusts Barry Honig overall

1. Ben M. Webb
2. Andrej Sali
3. Andriy Kryshtafovych
4. Adrian A. Canutescu
5. Sean R. McGuffee
6. Michael Feig
7. Kurt S. Thorn
8. Narayanan Eswar
9. Ke Tang

Papers from Barry Honig's perspective

Ordered by how strongly the researchers Barry Honig trusts endorse each paper. Same corpus, a different order for every researcher.

1. Announcing the worldwide Protein Data Bank
2. The Impact of Structural Genomics: Expectations and Outcomes (Science)
3. SWISS-MODEL: an automated protein homology-modeling server
4. The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models (Nucleic Acids Res.)
5. Can correct protein models be identified?
6. 3D-Jury: A Simple Approach to Improve Protein Structure Predictions (Bioinform.)
7. Improving sequence-based fold recognition by using 3D model quality assessment
8. Statistical potential for assessment and prediction of protein structures
9. CDART: protein homology by domain architecture. (Genome Research)
10. Comparative protein structure modeling of genes and genomes.

Their papers

• Evaluating conformational free energies: The colony energy and its application to the problem of loop prediction (2002) — 370 citations
• Outcome of a Workshop on Applications of Protein Models in Biomedical Research (2009) — 145 citations
• Structure-based prediction of protein-protein interactions on a genome-wide scale (2012) — 685 citations
• Using multiple structure alignments, fast model building, and energetic analysis in fold recognition and homology modeling (2003) — 313 citations
• Electrostatic aspects of protein-protein interactions. (2000) — 724 citations
• Protein interface conservation across structure space (2010) — 155 citations
• A hierarchical approach to all‐atom protein loop prediction (2004) — 2,320 citations
• On the accuracy of homology modeling and sequence alignment methods applied to membrane proteins. (2006) — 242 citations
• Functional specificity of a Hox protein mediated by the recognition of minor groove structure. (2007) — 342 citations
• The role of DNA shape in protein-DNA recognition (2009) — 1,081 citations
• Origins of specificity in protein-DNA recognition (2010) — 907 citations
• On the role of the crystal environment in determining protein side-chain conformations. (2002) — 1,072 citations
• The role of electrostatic and nonpolar interactions in the association of peripheral proteins with membranes (2002) — 83 citations
• Rapid grid‐based construction of the molecular surface and the use of induced surface charge to calculate reaction field energies: Applications to the molecular systems and geometric objects (2002) — 648 citations