Inanç Birol
Molecular Biology · 2009–2018
A researcher in the Science corpus: 27 papers; trusts 10 researchers and is trusted by 9 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 425 citations into it; #4,975 of 17,773 by trust here, #381 by citations
- Plant Science — 54 citations into it
- Artificial Intelligence — 19 citations into it
- Ecology — 18 citations into it
- Statistical and Nonlinear Physics — 9 citations into it
Whom Inanç Birol trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Heng Li
- W. James Kent
- Daniel R. Zerbino
- Mark J. P. Chaisson
- Petros Drineas
- Pavel A. Pevzner
- Jared T Simpson
- Temple F. Smith
- Paolo Ferragina
- William W. Cohen
Who trusts Inanç Birol overall
- Matthew Riemer
- Manfred G. Grabherr
- Manuel Garber
- Marcel H. Schulz
- Daniel R. Zerbino
- Qiongyi Zhao
- Tim Klinger
- Niranjan Nagarajan
- Michele M. Franceschini
- W. White
Papers from Inanç Birol's perspective
Ordered by how strongly the researchers Inanç Birol trusts endorse each paper. Same corpus, a different order for every researcher.
- Basic local alignment search tool.
- Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
- Identification of common molecular subsequences.
- Whole-genome re-sequencing. (Current Opinion in Genetics and Development)
- De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer. (Genome Research)
- A Greedy Algorithm for Aligning DNA Sequences (J. Comput. Biol.)
- Limitations of next-generation genome sequence assembly (Nature Methods)
- BLAT--the BLAST-like alignment tool. (Genome Research)
- Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing (Nature Genetics)
- ABySS: a parallel assembler for short read sequence data. (Genome Research)
Their papers
- ABySS: a parallel assembler for short read sequence data. (2009) — 1,394 citations
- De novo assembly and analysis of RNA-seq data (2010) — 993 citations
- Circos: an information aesthetic for comparative genomics. (2009) — 10,071 citations
- Assemblathon 1: a competitive assessment of de novo short read assembly methods. (2011) — 544 citations
- De novo transcriptome assembly with ABySS (2009) — 430 citations
- Comprehensive molecular portraits of human breast tumors (2012) — 7,518 citations
- Comprehensive Molecular Characterization of Human Colon and Rectal Cancer (2012) — 7,754 citations
- mrsFast: a cache-oblivious algorithm for short-read mapping (2010) — 314 citations
- The genetic landscape of high-risk neuroblastoma (2013) — 1,115 citations
- Frequent mutation of histone modifying genes in non-Hodgkin lymphoma (2011) — 1,628 citations
- The clonal and mutational evolution spectrum of primary triple-negative breast cancers (2012) — 1,975 citations
- Genomic and Epigenomic Landscapes of Adult De Novo Acute Myeloid Leukemia (2013) — 4,584 citations
- Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data (2013) — 357 citations
- Somatic mutation of EZH2 (Y641) in Follicular and Diffuse Large B-cell Lymphomas of Germinal Center Origin (2010) — 920 citations
- Subgroup-specific structural variation across 1,000 medulloblastoma genomes (2012) — 871 citations
- Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer. (2017) — 2,335 citations
- ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter (2016) — 616 citations
- Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma. (2018) — 657 citations
- Integrated Genomic Characterization of Pancreatic Ductal Adenocarcinoma (2017) — 1,688 citations
- Sampling with Minimum Sum of Squared Similarities for Nystrom-Based Large Scale Spectral Clustering (2015) — 21 citations