Gerhard Hummer
Molecular Biology · 2000–2022
A researcher in the Science corpus: 24 papers; trusts 21 researchers and is trusted by 49 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 151 citations into it; #5,827 of 17,773 by trust here, #5,601 by citations
- Computational Biology & Bioinformatics — 44 citations into it
- Atomic and Molecular Physics, and Optics — 32 citations into it; #838 of 7,135 by trust here, #724 by citations
- Biomedical Engineering — 32 citations into it; #1,237 of 10,734 by trust here, #1,161 by citations
- Structural Biology — 22 citations into it
- Computational Theory and Mathematics — 20 citations into it; #3,701 of 12,182 by trust here, #6,165 by citations
- AI for Physical Sciences — 10 citations into it
- Surfaces, Coatings and Films — 10 citations into it
Whom Gerhard Hummer trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Charles H. Bennett
- Christopher Jarzynski
- Ioannis G. Kevrekidis
- Alexandre J. Chorin
- Sjors H. W. Scheres
- O. Dudko
- W. L. Jorgensen
- T. Darden
Who trusts Gerhard Hummer overall
- Felix Ritort
- U. Seifert
- Ioannis G. Kevrekidis
- Ronald R. Coifman
- Christopher Jarzynski
- C. Tang
- Sanghyun Park
- Eric H. Lee
- Stefano Piana
- O. Dudko
Papers from Gerhard Hummer's perspective
Ordered by how strongly the researchers Gerhard Hummer trusts endorse each paper. Same corpus, a different order for every researcher.
- Comparison of simple potential functions for simulating liquid water
- UCSF Chimera—A visualization system for exploratory research and analysis
- A subspace approach to balanced truncation for model reduction of nonlinear control systems
- Equation-Free, Coarse-Grained Multiscale Computation: Enabling Mocroscopic Simulators to Perform System-Level Analysis
- Reversible Unfolding of Single RNA Molecules by Mechanical Force (Science)
- Highly accurate protein structure prediction for the human proteome
- ColabFold: making protein folding accessible to all
- Coarse molecular dynamics of a peptide fragment: Free energy, kinetics, and long-time dynamics computations
- Protein Structure Prediction Using Rosetta
- Highly accurate protein structure prediction with AlphaFold
Their papers
- Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop (2015) — 175 citations
- Optimized molecular dynamics force fields applied to the helix-coil transition of polypeptides. (2009) — 811 citations
- Water conduction through the hydrophobic channel of a carbon nanotube (2001) — 3,096 citations
- Equation-free: The computer-aided analysis of complex multiscale systems (2004) — 408 citations
- Osmotic water transport through carbon nanotube membranes (2003) — 810 citations
- Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1 (2021) — 3,841 citations
- Filling and emptying kinetics of carbon nanotubes in water (2002) — 201 citations
- AI-based structure prediction empowers integrative structural analysis of human nuclear pores (2022) — 270 citations
- New perspectives on hydrophobic effects (2000) — 213 citations
- Fast-growth thermodynamic integration: Error and efficiency analysis (2001) — 231 citations
- Native contacts determine protein folding mechanisms in atomistic simulations (2013) — 628 citations
- Coarse molecular dynamics of a peptide fragment: Free energy, kinetics, and long-time dynamics computations (2002) — 238 citations
- System-Size Dependence of Diffusion Coefficients and Viscosities from Molecular Dynamics Simulations with Periodic Boundary Conditions (2004) — 1,355 citations
- Inward-facing conformation of a multidrug resistance MATE family transporter (2019) — 47 citations
- Theory, analysis, and interpretation of single-molecule force spectroscopy experiments (2008) — 626 citations
- Papain-like protease regulates SARS-CoV-2 viral spread and innate immunity (2020) — 978 citations
- In situ structural analysis of SARS-CoV-2 spike reveals flexibility mediated by three hinges (2020) — 598 citations
- Systematic evaluation of CS‐Rosetta for membrane protein structure prediction with sparse NOE restraints (2017) — 7 citations
- BioEM: GPU-accelerated computing of Bayesian inference of electron microscopy images (2016) — 33 citations
- Bayesian ensemble refinement by replica simulations and reweighting. (2015) — 222 citations