Jens Erik Nielsen
Molecular Biology · 2000–2020
A researcher in the Science corpus: 9 papers; trusts 1 researcher and is trusted by 44 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 41 citations into it; #1,098 of 17,773 by trust here, #3,261 by citations
Whom Jens Erik Nielsen trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
Who trusts Jens Erik Nielsen overall
- Nobuhiko Tokuriki
- Emidio Capriotti
- Jesse D. Bloom
- Yves Dehouck
- Abhishek Niroula
- Jeffrey R. Brender
- Hongyi Zhou
- Ivan V. Anishchenko
- Dan S. Tawfik
- Joost Schymkowitz
Papers from Jens Erik Nielsen's perspective
Ordered by how strongly the researchers Jens Erik Nielsen trusts endorse each paper. Same corpus, a different order for every researcher.
- VMD: visual molecular dynamics.
- AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility
- Generalized born models of macromolecular solvation effects. (Annual review of physical chemistry (Print))
- The Amber biomolecular simulation programs
- CHARMM: The biomolecular simulation program
- 3Dmol.js: molecular visualization with WebGL
- How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules? (Journal of Computational Chemistry)
- Extending the treatment of backbone energetics in protein force fields: Limitations of gas‐phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations
- Scalable molecular dynamics with NAMD
- PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations
Their papers
- Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations. (2002) — 1,685 citations
- PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations (2004) — 3,375 citations
- PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations (2007) — 1,956 citations
- Web servers and services for electrostatics calculations with APBS and PDB2PQR (2011) — 304 citations
- Prolyl hydroxylase-1 negatively regulates IκB kinase-β, giving insight into hypoxia-induced NFκB activity (2006) — 706 citations
- Protein engineering of bacterial α-amylases (2000) — 273 citations
- Conformational heterogeneity of Savinase from NMR, HDX-MS and X-ray diffraction analysis (2020) — 6 citations
- Improvements to the APBS biomolecular solvation software suite (2017) — 2,172 citations
- The determinants of α-amylase pH–activity profiles (2001) — 107 citations