Features and development of Coot

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In silico protein interaction screening uncovers DONSON’s role in replication initiation (2023, neutral): “The MCM3-DONSON-GINS complex predicted by AF-M was relaxed using AMBER (https:// ambermd.org/index.php),andhydrogenatoms wereremovedwithCoot( 67 ).”
The RIG-I receptor adopts two different conformations for distinguishing host from viral RNA ligands (2022, neutral): “All models were built and manually adjusted in Coot (Emsley et al., 2010).”
Protein sequence design with a learned potential (2022, positive): “The high-resolution F2C structure was traced with Buccaneer 73 and went through manual ﬁ tting using COOT 74 and re ﬁ nement using REFMAC 75 .”