UNIVERSAL PRIMERS AMPLIFY A 23S rDNA PLASTID MARKER IN EUKARYOTIC ALGAE AND CYANOBACTERIA 1
By A. Sherwood, Gernot G. Presting. 2007
336 citations recorded by the source corpus.
Subfields: Ecology, Oceanography
View Paper: https://www.semanticscholar.org/paper/f32dd525daed87633236d9a513dec0fbd62dbf8d
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In Ecology
- B. Clarkston
- H. Kucera
- G. Saunders
- T. E. Moore
- A. Kurihara
- Kimberly Y. Conklin
- A. Sherwood
- P. Vanormelingen
In Oceanography
- H. Kucera
- G. Saunders
- B. Clarkston
- T. E. Moore
- A. Kurihara
- Kimberly Y. Conklin
- A. Sherwood
- P. Vanormelingen
Citations in the corpus
- A molecular method for identification of the morphologically plastic invasive algal genera Eucheuma and Kappaphycus (Rhodophyta, Gigartinales) in Hawaii (2009, methodology): “PCR cycling conditions and primers followed those described in Sherwood and Presting (2007) for UPA, Saunders (2005) for COI, and Zuccarello et al. (2006) for the cox2-3 spacer.”
- An evaluation of rbcL, tufA, UPA, LSU and ITS as DNA barcode markers for the marine green macroalgae (2010, methodology): “Previous to this study, the only marine green macroalgal genera for which the UPA had been tested were Codium, Prasiola, Rosenvingiella, and Ulva (Sherwood & Presting, 2007).”
- A comparison of two DNA barcode markers for species discrimination in the red algal family Kallymeniaceae (Gigartinales, Florideophyceae), with a description of Euthora timburtonii sp. nov. (2010, methodology): “Both COI-5P and UPA have been proposed as species markers for red algae (Saunders 2005; Sherwood and Presting 2007).”
- Reconstructing hyperdiverse food webs: Gut content metabarcoding as a tool to disentangle trophic interactions on coral reefs (2019, neutral): “…Sipuncula Unidentified Families 1 2 3 4 O TU re la tiv e ab un da nc e ac ro ss fi sh s pe ci es (% ) OTU frequency across fish species well for a number of eukaryotic organisms, such as Chlorophyta (green algae) and Nematoda (round worms) (Leray, Yang, et al., 2013; Sherwood & Presting, 2007).”
- Refinements for the amplification and sequencing of red algal DNA barcode and RedToL phylogenetic markers: a summary of current primers, profiles and strategies (2013, methodology): “As with the previous markers, we generate se- 37 http://e-algae.kr Plastid LSU (23S) domain V (UPA, ~370 bp) Sherwood and Presting (2007) championed UPA as a universal barcode marker for the algae noting that a single primer pair can reliably recover sequences from a broad taxonomic range including…”
- DNA barcoding for species identification and discovery in diatoms (2010, background): “UPA, which was selected as a promising marker for barcoding on the basis of its performance in other groups of organisms (Sherwood & Presting, 2007), does not discriminate sufficiently between closely related species of diatoms (Hamsher et al. , in press). with the selection of rbc L-3P and the…”