A High-Resolution Root Spatiotemporal Map Reveals Dominant Expression Patterns

By S. Brady, David A. Orlando, Ji-Young Lee, Jean Y. Wang, Jeremy Koch, J. Dinneny, Daniel L. Mace, Uwe Ohler, Philip N. Benfey. Science, 2007

1,139 citations recorded by the source corpus.

Subfields: Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/e9dbd42c6b2a5146901fc5f2871ff388db192507

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Citations in the corpus

Inaugural Article: The protein expression landscape of the Arabidopsis root (2012, positive): “To calculate enrichment ofGO terms for the proteins identified solely in each individual cell population, as well as protein members of individual spatial clusters of the root cellular proteome, we used software using the hypergeometric distribution, which tests whether GO terms are found in a list ”
Plant root growth, architecture and function (2009, background): “The advent of genomic resources have allowed the combination of global profiling with novel biological approaches such as enhancer trap lines driving green fluorescent protein (GFP) expression in specific root cell types (Brady et al. 2007).”
Transcriptional regulation of ROS controls transition from proliferation to differentiation in the root. (2010, methodology): “Interestingly , in plants containing this construct, we detected low GFP fluorescence in the LRC and the meristematic zone.”
Uptake of organic nitrogen by plants. (2009, background): “In a recent study (Brady et al., 2007) the resolution was enhanced to cover 13 developmental zones and 19 cell types.”
Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis (2009, background): “To further validate the capture of mRNAs from the targeted cell populations we compared cellspecific transcriptome data obtained by microdissection or sorting of GFP-labeled protoplasts to the translatomes (Fig.”
Control of Arabidopsis root development. (2012, background): “Recent reports have shown that the auxin biosynthesis genes are expressed specifically in the root stem cell niche, where they increase auxin levels (19, 142, 143).”
Auxin control of root development. (2010, background): “A single root contains a number of cell types, which can be discerned by visual and molecular markers (Dolan et al. 1993; Birnbaum et al. 2005; Laplaze et al. 2005; Brady et al. 2007).”
Cell Identity Mediates the Response of Arabidopsis Roots to Abiotic Stress (2008, neutral): “PHL (salt-stress only) S32 (At2g18380) Proto-phloem Lee et al. (2006) (20) Brady et al. (2007)(24) Supplementary Table 4 (Microsoft Excel file).”
The plant vascular system: evolution, development and functions. (2013, methodology): “However, phloem pole pericycle cells have a very distinct expression pattern and underlying transcriptional signature from that of xylem pole pericycle cells, as determined by expression profiling of marked populations of both of these cells relative to other cell types in the Arabidopsis root (Brad”
Flavonoids: new roles for old molecules. (2010, methodology): “To examine the expression of MATE genes in roots, we extracted the transcriptome data for MATE genes from the root expression map database (www.arexdb.org) (Birnbaum et al. 2003; Brady et al. 2007).”