Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

By Manolis Kellis, Bruce W. Birren, Eric S. Lander. Nature, 2004

1,545 citations recorded by the source corpus.

Subfields: Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/e933d691c67b22ab3d91a7777a16d9d36a287867

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Citations in the corpus

Teleost fish with specific genome duplication as unique models of vertebrate evolution (2010, background): “4), which was initially presented in a pioneering study (Kellis et al. 2004) on the yeast Saccharomyces cerevisiae genome, which experienced a WGD.”
Rapid Subfunctionalization Accompanied by Prolonged and Substantial Neofunctionalization in Duplicate Gene Evolution (2005, background): “For example, asymmetric evolutionarygene acquiring new function may retain all (NF-I), none rates between duplicates have been used to support NF(NF-II), or some (NF-III) of the ancestral functions (Fig(Kellis et al. 2004).”
Genomics of the fungal kingdom: Insights into eukaryotic biology (2005, background): “Moreover, a whole-genome duplication in yeast followed by massive gene loss, first predicted by Wolfe and colleagues (Wolfe and Shields 1997), has been confirmed by comparative analysis (Dujon et al. 2004; Kellis et al. 2004) and shown to have had a significant impact on yeast fermentation from carb”
The role of hybridization in plant speciation. (2009, background): “The genomes of yeast and other Saccharomyces were anciently duplicated (50, 85, 222).”
The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. (2005, methodology): “At the other end of the scale, the 50 slowest-evolving ohnolog pairs are almost all ribosomal protein genes, many of which are being homogenized within species by gene conversion (Gao and Innan 2004; Kellis et al. 2004).”
A proteome-wide fission yeast interactome reveals network evolution principles from yeasts to human (2016, background): “Since S. pombe paralogs arose via SSDs, while many S. cerevisiae paralogs arose via a WGD event (Kellis et al., 2004), this result suggests that duplication modes could impact paralog divergence differently.”