Rapid Subfunctionalization Accompanied by Prolonged and Substantial Neofunctionalization in Duplicate Gene Evolution

By Xionglei He, Jianzhi Zhang. Genetics, 2005

678 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/57672769e8dd6314d725730230c056d18a8607a6

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Citations in the corpus

Bio::Homology::InterologWalk - A Perl module to build putative protein-protein interaction networks through interolog mapping (2011, background): “It has been shown [51] that gene duplication is correlated with sub-functionalisation and neo-functionalisation.”
Bgee: Integrating and Comparing Heterogeneous Transcriptome Data Among Species (2008, background): “For instance, yeast microarray data provided evidence for divergence of expression after genome duplication [5], and further studies have succeeded in extracting some evidence for the evolution of new gene functions after genome duplication in yeast and human lineages [6, 7].”
Evolutionary and comparative analysis of MYB and bHLH plant transcription factors. (2011, background): “Such a model implies that R2R3MYB sub-functionalization may precede the appearance of new functions, as predicted by the sub-neo-functionalization model (He and Zhang, 2005).”
Teleost fish with specific genome duplication as unique models of vertebrate evolution (2010, background): “…both loss of gene function and sub-neofunctionalization between duplicates (partitioning of the ancestral functions of the pre-duplicate gene leading to long-term persistence and adaptive evolution of the duplicates; Ohno 1970; Force et al. 1999; He and Zhang 2005; Rastogi and Liberles 2005).”
Turning a hobby into a job: How duplicated genes find new functions (2008, background): “After preservation, duplicate genes continue to evolve, meaning that subfunctionalization can contribute to novelty simply by enabling duplicate genes to survive for long periods, increasing the chances of a neofunctionalizing mutatio”
A proteome-wide fission yeast interactome reveals network evolution principles from yeasts to human (2016, background): “However, there has been much debate in the literature regarding the relative extents of sub-functionalization and neo-functionalization for diverged paralogs (Gibson and Goldberg, 2009; He and Zhang, 2005).”
Developmental Gene Evolution and the Origin of Grass Inflorescence Diversity (2006, background): “Models have been proposed by which this might happen (He and Zhang, 2005).”
Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition. (2009, background): “Although it is true that subfunctionalization (the gene division of labor mechanism) happens between higher plant duplicate genes (15, 42) as it does in all other organisms (16, 17, 26, 45, 99), happens without selection (28, 29, 48, 69), and is expected to preserve duplicates (60), that does not im”
The evolutionary consequences of polyploidy. (2007, background): “At a broader scale, duplicated gene pairs in yeast are involved in almost twice as many protein-protein interactions as singletons (He and Zhang, 2005).”
Evolution of Gene Duplication in Plants1[OPEN] (2016, background): “Thus, the distinguishing characteristic of EAC is improvement of the original ancestral function in one duplicate and of the novel function in the other (Des Marais and Rausher, 2008).”
Why Do Hubs Tend to Be Essential in Protein Networks? (2006, positive): “Singleton genes and duplicate genes were defined by all-against-all BLASTP searches of yeast proteins, following [34].”