Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer

By Jun Yu, Q. Feng, S. Wong, Dongya Zhang, Q. Liang, Youwen Qin, Longqing Tang, Hui Zhao, J. Stenvang, Yanling Li and 29 more. Gut, 2015

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Dietary cholesterol drives fatty liver-associated liver cancer by modulating gut microbiota and metabolites (2020, methodology): “Metagenomic sequencing of human stool was performed as previously described.(5)”
Akkermansia muciniphila is a promising probiotic (2019, background): “muciniphila-like bacteria was observed by metagenomic analysis (Zeller et al., 2014; Yu et al., 2017).”
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3 (2020, methodology): “To illustrate the potential of bioBakery 3’s updated profiling tools and to extend our understanding of the microbial signatures in colorectal cancer (CRC), we expanded our previous work to meta-analyze both existing and newly available CRC metagenomic cohorts for a total of 1262 samples (600 contro”
Gut microbiome analysis as a tool towards targeted non-invasive biomarkers for early hepatocellular carcinoma (2018, background): “…microbial dysbiosis could have universal features, which present a similar trend to the gut microbial distribution and characteristics of CRC. 18 These results indicated that gut microbiota-targeted biomarkers may become potential non-invasive tools for early diagnosis of HCC. Recent studies…”