PERMANOVA+ for PRIMER. Guide to software and statistical methods

By Marti J. Anderson, Raymond N. Gorley, Kelsey S. Clarke, Mary Anderson, K. Clarke, Mj Andersom. 2008

6,377 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/e2e9ae9f0a06ff6edfd8edb93e2d3ced457606df

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Citations in the corpus

Animal-sediment relationships re-visited: Characterising species' distributions along an environmental gradient using canonical analysis and quantile regression splines (2008, methodology): “The analysis was based on BrayCurtis dissimilarities calculated from square-root transformed abundances, using the PERMANOVA+ add-on package for PRIMER v6 (Clarke and Gorley, 2006; Anderson et al., 2008).”
Humans, bees, and pollination services in the city: the case of Chicago, IL (USA) (2014, unknown): “PRIMER v 6.1.13 (Anderson et al. 2008) to create the distance-based linear models.”
Floral volatiles play a key role in specialized ant pollination (2014, methodology): “PERMANOVA is a technique for testing the simultaneous response of one or more variables to one or more factors in an ANOVA experimental design on the basis of a (dis)similarity (distance) matrix with permutation methods (Anderson et al., 2008).”
Variation in the morphology, reproduction and development of the habitat-forming kelp Ecklonia radiata with changing temperature and nutrients (2013, methodology): “Permutational tests of multivariate dispersion (PERMDISP; Anderson et al. 2008) were done to assess the effect of the dispersion of observations about their centroid on the centroid’s position in multivariate space.”
Addressing assumptions: variation in stable isotopes and fatty acids of marine macrophytes can confound conclusions of food web studies (2013, methodology): “We analyzed multivariate biomarker data using a variety of routines in PRIMER v6 (Clarke & Gorley 2006) and permutational multivariate analysis of variance (PERMANOVA; Anderson et al. 2008).”
Bait attraction affects the performance of remote underwater video stations in assessment of demersal fish community structure (2007, methodology): “To investigate the proportion of variance that each of the variables (treatment, habitat and depth) contributed to the assemblage structure we undertook a distancebased multivariate analysis for a linear model (DISTLM) (Anderson & Gorley 2007) using forward selection.”
Taxonomic sufficiency in freshwater ecosystems: effects of taxonomic resolution, functional traits, and data transformation (2013, methodology): “The values in the matrix are not treated as independent of one another (Anderson et al. 2008), which enables comparison of matrices derived from the same data (e.g., different taxonomic or numerical levels).”
Comparative behavior of red lionfish Pterois volitans on native Pacific versus invaded Atlantic coral reefs. (2012, methodology): “One-way univariate permutational analyses of variance (PERMANOVA; Anderson et al. 2008) were used to compare strike and kill rate means at the level of ocean vs. ocean, with region nested within ocean.”
Spatial extent, regional specificity and metacommunity structuring in lake macrophytes (2013, methodology): “CAP and PERMDISP were run using permanova+ for primer (Anderson et al., 2008).”
Morphological assessment of the Octopus vulgaris species complex evaluated in light of molecular‐based phylogenetic inferences (2017, methodology): “Morphological indices of both males and females were mean scale-transformed (Berner 2011) and normalised using the ‘normalise variables’ function in PRIMER E+ v6 and PERMANOVA+ (Anderson et al. 2008) to allow for comparisons of traits despite differing scales of measurement.”