Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III.

By J. Shaw, Edgar B. Lickey, E. Schilling, R. Small. American-Eurasian journal of botany, 2007

2,081 citations recorded by the source corpus.

Subfields: Ecology, Evolution, Behavior and Systematics, Genetics, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/dde866ddb7471f371f9b86e2178dd12ada2f8daf

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In Ecology, Evolution, Behavior and Systematics

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Citations in the corpus

Phylogeographic consequences of different introduction histories of invasive Australian Acacia species and Paraserianthes lophantha (Fabaceae) in South Africa (2011, methodology): “For A. pycnantha, we amplified the rpl32-trnL(UAG) chloroplast intergenic spacer region using primers described by Shaw et al. (2007).”
Area and the rapid radiation of Hawaiian Bidens (Asteraceae) (2012, methodology): “The chloroplast loci used in this study (trnV–ndhC, rpl32f–trnL, trnQ–rps16 and rpl32r–ndhF) are non-coding introns and spacers and are (on average across a wide variety of plant families) the four most rapidly evolving markers known from this genome (Shaw et al., 2007), although substitution rate h”
Phylogenetic utility of ycf1 in orchids: a plastid gene more variable than matK (2009, background): “However, relatively few chloroplast regions are commonly used for phylogenetic studies, although efforts have been made to discover more variable ones (Shaw et al. 2005, 2007).”
Origin and domestication of native Amazonian crops. (2010, background): “Universal chloroplast DNA sequences [74] are now being used to determine the phylogenetic relationships among cultivated and wild populations in the core collection, as well as the closely related B.”
DNA barcoding: a tool for improved taxon identification and detection of species diversity (2011, background): “This spacer region is considered to be the most variable plastid region in angiosperms (e.g., Kress and Erickson 2007, but see, Shaw et al. 2007).”
Plant DNA barcoding: from gene to genome (2015, background): “These attributes make trnHpsbA highly suitable as a plant barcode for species discrimination (Kress & Erickson, 2007; Shaw et al., 2007), and extensive barcoding studies demonstrated that in some land plant groups such as Hydrocotyle, Dendrobium and Pteridophytes (van de Wiel et al.”
The chloroplast genome: a review (2020, background): “Among terrestrial plants, the cpDNA is highly conserved, in terms of both structure and the content and order of the placement of particular genes (Shaw et al. 2007).”