AmiGO: online access to ontology and annotation data
By S. Carbon, A. Ireland, C. Mungall, S. Shu, B. Marshall, Suzanna Lewis. Bioinform., 2008
1,887 citations recorded by the source corpus.
AmiGO is a web application that allows users to query, browse and visualize ontologies and related gene product annotation (association) data. AmiGO can be used online at the Gene Ontology (GO) website to access the data provided by the GO Consortium1; it can also be downloaded and installed to browse local ontologies and annotations.2 AmiGO is free open source software developed and maintained by the GO Consortium. Availability: http://amigo.geneontology.org Download: http://sourceforge.net/projects/geneontology/ Contact: sjcarbon@berkeleybop.org
Subfields: Molecular Biology
View Paper: https://www.semanticscholar.org/paper/dc623c073681270e6f4d2bc14476535f4f7df4da
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Molecular Biology
- Luke A. Gilbert
- Jonathan S. Weissman
- C. Mungall
- Suzanna Lewis
- Judith A. Blake
- Max A. Horlbeck
- Britt Adamson
- Jacqueline E. Villalta
Citations in the corpus
- The Gene Ontology of eukaryotic cilia and flagella (2017, methodology): “Up-to-date GO annotations may be freely downloaded from the GO website [53] or using QuickGO [51].”
- The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses (2012, background): “Ontology terms and the associated annotation data sets can be accessed through the web browser (Carbon et al. 2009) on the PO home page (http://plantontology.org) (Fig.”
- Genenames.org: the HGNC and VGNC resources in 2019 (2018, background): “We have added the following new links: ClinVar, ClinGen (27) and dbVar (28) have been added to the ‘Clinical resources’ panel and AmiGO (29) links have been added to the ‘Other resources’ section.”
- PHOSIDA 2011: the posttranslational modification database (2010, neutral): “The gene ontology data were derived from the AMIGO website (31,32).”
- A multiplexed single-cell CRISPR screening platform enables systematic dissection of the unfolded protein response (2016, methodology): “org), AmiGO, the GO Consortium’s annotation and ontology toolkit (Carbon et al., 2009) (http://amigo.”
- Transcriptomic characteristics of bronchoalveolar lavage fluid and peripheral blood mononuclear cells in COVID-19 patients (2020, methodology): “To inspect genes in specific GO-term and pathway, the GO and KEGG pathway annotation were downloaded from Gene Ontology Resource (Last updated: 22 February 2020) [28] and KEGG database (Last updated: 14 January 2020) [29], respectively.”
- ALSoD: A user‐friendly online bioinformatics tool for amyotrophic lateral sclerosis genetics (2012, neutral): “, ProtScale [Gasteiger et al., 2005], KEGG [Kanehisa et al., 2000], Uniprot [Jain et al., 2009], iHop [Hoffmann and Valencia, 2004], Pathway in KEGG[Kanehisaetal.,2000],GeneTest[Pagonetal.,2002],AmiGO [Carbonetal.,2009],Ensembl[Hubbardetal.,2009],NCBI[Sherry etal.,2001],LifeScienceDB(Japan)[Yoshidae”
- miRSystem: An Integrated System for Characterizing Enriched Functions and Pathways of MicroRNA Targets (2012, methodology): “Five pathway databases, including Gene Ontology [26], KEGG [27], BioCarta, Pathway Interaction Database [28], and Reactome [29], were used to annotate the biological functions and canonical pathways of target genes.”