The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant

By E. Huala, A. Dickerman, M. Garcia-Hernandez, D. Weems, L. Reiser, F. LaFond, D. Hanley, Donald Kiphart, Mingzhe Zhuang, Wen Huang and 9 more. Nucleic Acids Res., 2001

581 citations recorded by the source corpus.

Subfields: Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/d8be974bd6a78c3d5d3cf3b21563495b38f660a8

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Citations in the corpus

Creating the gene ontology resource: design and implementation. (2001, background): “and Implementation”
Standardized description of scientific evidence using the Evidence Ontology (ECO) (2014, methodology): “The GO evidence codes and the more extensive codes used by The Arabidopsis Information Resource (9) and FlyBase (10) provided the initial terms.”
Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps. (2008, background): “The Arabidopsis Information Resource (TAIR): A comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant.”
AraCyc: A Biochemical Pathway Database for Arabidopsis1 (2003, methodology): “Ara-Cyc is available on the TAIR Web site (Huala et al., 2001”
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology (2010, background): “Development of organism-specific DBs Organism-specific DBs (also known as MODs) describe the genome and other information about an organism [8–19].”
GOToolBox: functional analysis of gene datasets based on Gene Ontology (2004, background): “The hierarchical organization of the gene ontology is particularly well adapted to computational processing and is used for the functional annotations of gene products of several model organisms such as budding yeast [2], Drosophila [3], mouse [4], nematode [5] and Arabidopsis [6].”
The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community (2003, methodology): “Currently, four types of user support are provided: (1) Email communication.”
The Arabidopsis Information Resource: Making and Mining the ‘Gold Standard’ Annotated Reference Plant Genome (2015, methodology): “TAIRwaslaunchedin1999justpriortothe releaseofthepublicgenomesequenceandrapidly becameanindispensableresourceforthousandsof plant biology researchers around the world (Huala et al ., 2001).”
PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor (2007, unknown): “The TAIR7pS table comprises a total of 928 449 serine site motifs in 31 921 protein sequences.”