ARAMEMNON, a Novel Database for Arabidopsis Integral Membrane Proteins1

By R. Schwacke, Anja Schneider, E. van der Graaff, K. Fischer, E. Catoni, M. Desimone, W. Frommer, U. Flügge, R. Kunze. Plant Physiology, 2003

679 citations recorded by the source corpus.

Subfields: Molecular Biology

View Paper: https://www.semanticscholar.org/paper/d5ae5a965ac5ad79128082d7d1edf9d7ab1d840b

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Citations in the corpus

Ornithine-δ-aminotransferase is essential for Arginine Catabolism but not for Proline Biosynthesis (2008, methodology): “Data on subcellular localisation prediction were taken from the ARAMEMNON database [22,53].”
The Transporter Classification Database (2013, methodology): “It is easy to use, but lacks the detailed text descriptions of sequences and families that can be found in TCDB. (iii) Aramemnon (61) provides manually curated protein descriptions for six plant species using a clustering algorithm that has been applied on a matrix of pairwise distances between sequ”
Cytokinin-Deficient Transgenic Arabidopsis Plants Show Multiple Developmental Alterations Indicating Opposite Functions of Cytokinins in the Regulation of Shoot and Root Meristem Activity Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.014928 (2003, background): “These partially ambiguous predictions and the fact that computer algorithms occasionally fail to predict subcellular localizations correctly (Emanuelsson and von Heijne, 2001; Schwacke et al., 2003) emphasized the need for in vivo targeting experiments.”
SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis (2012, methodology): “A number of key databases have been developed to integrate localization data from different sources, such as the Plant Proteomics Database (PPDB) (2), AT_CHLORO (7) and ARAMEMNON (8).”
Vacuolar H+-ATPase Activity Is Required for Endocytic and Secretory Trafficking in Arabidopsis[W] (2006, background): “Based on the prediction of six transmembrane-spanning domains for all Arabidopsis VHA-a isoforms (Schwacke et al., 2003), a cytosolic location of GFP is assumed.”
Flavonoids: new roles for old molecules. (2010, background): “1999) with 9 to 14 membrane-spanning domains (Schwacke et al. 2003).”
MscS‐Like Proteins in Plants (2007, background): “Figure 2 also illustrates the predicted topologies of the MSL proteins (the Aramemnon database; Schwacke et al., 2003).”
PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update (2009, background): “The protein summary page now provides dynamic links to further external resources, such as Aramemnon (18), eFP browser (19), co-expression networks ATTED-II (20), subcellular localization (21) and other more general protein information at the GABI Primary Database (22).”