Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities
By Héctor García Martín, Natalia N. Ivanova, Victor Kunin, F. Warnecke, Kerrie W. Barry, Alice Carolyn McHardy, C. Yeates, Shaomei He, A. Salamov, Ernest Szeto and 9 more. Nature Biotechnology, 2006
751 citations recorded by the source corpus.
Subfields: Ecology, Environmental Engineering, Pollution
View Paper: https://www.semanticscholar.org/paper/cf5452a43e4115dd1a0d017584cfc4a090d64331
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Ecology
- Nikos Kyrpides
- Victor Kunin
- Carola Simon
- Alla L. Lapidus
- K. Mavromatis
- Alex Copeland
- Rolf Daniel
- Peer Bork
In Pollution
Citations in the corpus
- A Computational Screen for Type I Polyketide Synthases in Metagenomics Shotgun Data (2008, methodology): “Our approach included the creation and use of domain specific HMMs to find members of the type I PKS domain in six published metagenomic data sets - Minnesota farm soil (MSF) [21], Sargasso Sea (SGS) [22], human gut (HGUT) [23], acid mine drainage (AMD) [24], enhanced biological phosphorus removal s”
- Accurate phylogenetic classification of variable-length DNA fragments (2007, neutral): “Assigned (high confidence) 3,444 (2,905)a 12,782 (11,459) 9,908 (9,062) Consistency (%) 97.”
- A Bioinformatician's Guide to Metagenomics (2008, background): “However, species-rich communities can also fall into this category, such as enhanced biological phosphorus-removing (EBPR) sludge (47) and an anaerobic ammonia-oxidizing reactor (129), which have one dominant population flanked by a long tail of low-abundance species.”
- IMG ER: a system for microbial genome annotation expert review and curation (2009, positive): “IMG/M ER’s comparative analysis tools allow detecting assembly or gene prediction errors (Martin et al. 2006) which may lead to reprocessing the datasets and then reloading them into IMG/M ER as part of an iterative review process.”
- Microbial ecology of denitrification in biological wastewater treatment. (2014, background): “A contentious point arose in a later metagenomic study of two EBPRs, as the respiratory nitrate reductase (but not other denitrification genes) appears to be absent from Accumulibacter phosphatis (Martin et al., 2006).”
- Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes (2013, neutral): “Re-assembly [11].”
- Metagenomic Analyses: Past and Future Trends (2010, background): “Recent examples of metagenomic surveys of whole microbial communities include those studying the hindgut microbiota of a wood-feeding higher termite (138), glacier ice (110), sludge communities subjected to enhanced biological phosphorus removal (34), a biogas plant microbial community (63), and Min”
- IMG/M: a data management and analysis system for metagenomes (2007, background): “The current version of IMG/M (as of September 2007) contains metagenome datasets generated using shotgun sequencing for 10 projects involving a total of 24 microbiome samples, including an acid mine drainage biofilm (5), three isolated deep sea ‘whale fall’ carcass samples, an agricultural soil samp”