Nikos Kyrpides
Molecular Biology · 2000–2023
A researcher in the Science corpus: 54 papers; trusts 17 researchers and is trusted by 25 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 736 citations into it; #2,052 of 17,773 by trust here, #134 by citations
- Ecology — 293 citations into it; #6,773 of 10,717 by trust here, #174 by citations
- Genetics — 101 citations into it
- Computational Biology & Bioinformatics — 94 citations into it; #506 of 660 by trust here, #353 by citations
- Plant Science — 76 citations into it; #6,597 of 8,232 by trust here, #1,129 by citations
- Paleontology — 11 citations into it
Whom Nikos Kyrpides trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
Who trusts Nikos Kyrpides overall
Papers from Nikos Kyrpides's perspective
Ordered by how strongly the researchers Nikos Kyrpides trusts endorse each paper. Same corpus, a different order for every researcher.
- Basic local alignment search tool.
- The Pfam protein families database
- Identification of common molecular subsequences.
- The COG database: an updated version includes eukaryotes
- The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
- KEGG: Kyoto Encyclopedia of Genes and Genomes (Nucleic Acids Res.)
- A genomic perspective on protein families.
- NCBI Reference Sequences: current status, policy and new initiatives (Nucleic Acids Res.)
- The COG database: a tool for genome-scale analysis of protein functions and evolution
- Fast gapped-read alignment with Bowtie 2
Their papers
- Protein Structure Determination using Metagenome sequence data (2017) — 478 citations
- A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea (2009) — 1,012 citations
- Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications (2011) — 745 citations
- Use of simulated data sets to evaluate the fidelity of metagenomic processing methods (2007) — 347 citations
- The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata (2007) — 912 citations
- A framework for human microbiome research (2012) — 2,418 citations
- Structure, Function and Diversity of the Healthy Human Microbiome (2012) — 10,771 citations
- IMG/M: a data management and analysis system for metagenomes (2007) — 377 citations
- Insights into the phylogeny and coding potential of microbial dark matter (2013) — 2,164 citations
- IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes (2018) — 759 citations
- IMG: the integrated microbial genomes database and comparative analysis system (2011) — 1,354 citations
- Genomes OnLine Database (GOLD): a monitor of genome projects world-wide (2001) — 298 citations
- CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats (2007) — 955 citations
- WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction (2000) — 413 citations
- New insights from uncultivated genomes of the global human gut microbiome (2019) — 616 citations
- The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata (2011) — 442 citations
- Genomes OnLine Database (GOLD) v.8: overview and updates (2020) — 174 citations
- Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655 (2003) — 777 citations
- IMG 4 version of the integrated microbial genomes comparative analysis system (2013) — 577 citations
- A Catalog of Reference Genomes from the Human Microbiome (2010) — 715 citations