MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

By Koichiro Tamura, Daniel Peterson, N. Peterson, Glen Stecher, Masatoshi Nei, Sudhir Kumar. Molecular biology and evolution, 2011

41,194 citations recorded by the source corpus.

Subfields: Genetics, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/c700eee5f49366deed6d15f625083709cd323485

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Citations in the corpus

A review of the tribes of Deltocephalinae (Hemiptera: Auchenorrhyncha: Cicadellidae) (2013, methodology): “28S rDNA sequences were aligned using the MUSCLE algorithm (Edgar 2004) implemented in MEGA5 (Tamura et al. 2011).”
Switchgrass Genomic Diversity, Ploidy, and Evolution: Novel Insights from a Network-Based SNP Discovery Protocol (2013, methodology): “To assess the robustness of the topology of the tree, 500 bootstrap replicates were performed using MEGA [58].”
Untangling the Genetic Basis of Fibrolytic Specialization by Lachnospiraceae and Ruminococcaceae in Diverse Gut Communities (2013, methodology): “Tamura, K.; Peterson, D.; Peterson, N.; Stecher, G.; Nei, M.; Kumar, S. MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods.”
Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes (2013, methodology): “1 (Tamura et al., 2011).”
New supraordinal classification of Foraminifera: Molecules meet morphology (2013, methodology): “MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony method.”
Complete mitochondrial genomes and a novel spatial genetic method reveal cryptic phylogeographical structure and migration patterns among brown bears in north‐western Eurasia (2013, methodology): “Based on the NCmtDNA dataset, a sample-wise matrix of the Jukes–Cantor index was calculated using mega 5 (Tamura et al., 2011).”
Phylogeography of Quercus aquifolioides provides novel insights into the Neogene history of a major global hotspot of plant diversity in south‐west China (2017, methodology): “We aligned cpDNA sequences with ClustalW in mega 5.1 (Tamura et al., 2011) and checked them manually.”
Diversity of free-living and lichenized fungal communities in biological soil crusts of the Sultanate of Oman and their role in improving soil properties (2013, methodology): “, 1994) in the MEGA 5 software package (Tamura et al., 2011).”
A versatile real-time PCR method to quantify bovine contamination in buffalo products (2013, methodology): “, 2003) in MEGA version 5 (Tamura et al., 2011).”
Endophytic fungi harbored in Cannabis sativa L.: diversity and potential as biocontrol agents against host plant-specific phytopathogens (2013, methodology): “The sequence alignments were trimmed and verified by the MUSCLE (UPGMA) algorithm (Edgar 2004) using MEGA5 software (Tamura et al. 2011).”
Sedum plumbizincicola X.H. Guo et S.B. Zhou ex L.H. Wu (Crassulaceae): a new species from Zhejiang Province, China (2012, methodology): “Phylogenetic trees were inferred using maximum parsimony (MP) criteria as implemented in MEGA version 5.0 (Tamura et al. 2011).”
Triterpene biosynthesis in plants. (2014, methodology): “MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.”
The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses (2013, neutral): “05 [17].”