Haploview: analysis and visualization of LD and haplotype maps

By J. Barrett, B. Fry, J. Maller, Mark J. Daly. Bioinform., 2005

14,845 citations recorded by the source corpus.

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

The linkage disequilibrium and the selection of genetic markers for association studies in European populations (2007, methodology): “Another method is based on the solid spine of LD (Barrett et al. 2005).”
Genomewide Selection versus Marker‐assisted Recurrent Selection to Improve Grain Yield and Stover‐quality Traits for Cellulosic Ethanol in Maize (2013, methodology): “0 software (Barrett et al., 2005).”
Second-generation PLINK: rising to the challenge of larger and richer datasets (2014, methodology): “(More precisely, it is a restricted port of Haploview’s [23] implementation of the method).”
Human protein reference database—2006 update (2005, background): “It also integrates ‘Haploview’ for investigating population haplotype patterns (15).”
Privacy-Preserving Data Exploration in Genome-Wide Association Studies (2013, methodology): “The popular HaploView software package [1] also implements its own “solid spine” method.”
Mastering the Information Age - Solving Problems with Visual Analytics (2010, background): “2: Haploview LD display[12] with recombination rate plotted above (left) and haplotypes display (right)”
Identification of a novel non-coding RNA, MIAT, that confers risk of myocardial infarction (2006, unknown): “2 (Barrett et al. 2005).”
Variants in nicotinic receptors and risk for nicotine dependence. (2008, methodology): “Linkage disequilibrium between markers was computed using the software program Haploview (26).”