Using EMBL‐EBI Services via Web Interface and Programmatically via Web Services
By Fábio Madeira, Nandana Madhusoodanan, Joon Lee, Adrian R. N. Tivey, Rodrigo Lopez. 2014
28 citations recorded by the source corpus.
The European Bioinformatics Institute (EMBL‐EBI) provides access to a wide range of core databases and analysis tools that are of key importance in bioinformatics. As well as providing web interfaces to these resources, web services are available using REST and SOAP protocols that enable programmatic access and allow their integration into other applications and analytical workflows and pipelines. This article describes the various options available to researchers and bioinformaticians who would like to use our resources via the web interface employing RESTful web service clients provided in Perl, Python, and Java, or would like to use Docker containers to integrate the resources into analysis pipelines and workflows. © 2019 by John Wiley & Sons, Inc.
Subfields: Information Systems and Management, Molecular Biology, Spectroscopy
How researchers see this paper
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In Molecular Biology
- Johannes Söding
- Martin Steinegger
- Milot Mirdita
- Vikram Alva
- Seung-Zin Nam
- Andrei N. Lupas
- Felix Gabler
- S. Till
In Spectroscopy
- Martin Steinegger
- Johannes Söding
- Vikram Alva
- Seung-Zin Nam
- Andrei N. Lupas
- Milot Mirdita
- Jinbo Xu
- David T. Jones
Citations in the corpus
- Protein Sequence Analysis Using the MPI Bioinformatics Toolkit (2020, background): “…O’Donovan, & The UniProt Consortium, 2016; The UniProt Consortium, 2019)]; and integrative Web resources [the EMBL-EBI Bioin-formatics Web Services (Madeira et al., 2019; Madeira, Madhusoodanan, Lee, Tivey, & Lopez, 2019), the SIB Bioinformatics Resource Portal (Swiss Institute of Bioinformatics…”