Andrei N. Lupas

Molecular Biology · 1996–2021

A researcher in the Science corpus: 20 papers; trusts 40 researchers and is trusted by 59 researchers here, as inferred from the citation graph.

Subfields

• Molecular Biology — 196 citations into it; #465 of 17,773 by trust here, #1,932 by citations
• Computational Biology & Bioinformatics — 108 citations into it; #103 of 660 by trust here, #202 by citations
• Materials Chemistry — 57 citations into it; #4,616 of 11,513 by trust here, #5,715 by citations
• Spectroscopy — 25 citations into it; #720 of 1,674 by trust here, #1,487 by citations
• Genetics — 18 citations into it; #1,895 of 6,854 by trust here, #3,893 by citations
• Evaluation & Benchmarks — 12 citations into it
• Ecology — 11 citations into it
• Information Extraction — 5 citations into it

Whom Andrei N. Lupas trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Johannes Söding
2. Stephen F. Altschul
3. Sean R. Eddy
4. David C. Jones
5. Andreas Biegert
6. G. F. Joyce
7. Weizhong Li
8. Alexey G. Murzin
9. Mauro Delorenzi
10. Andrej Sali

Who trusts Andrei N. Lupas overall

1. Johannes Söding
2. Markus Gruber
3. Jinfeng Liu
4. Mauro Delorenzi
5. Burkhard Rost
6. Andreas Biegert
7. Vikram Alva
8. Terence P. Speed
9. Seung-Zin Nam
10. Michael Remmert

Papers from Andrei N. Lupas's perspective

Ordered by how strongly the researchers Andrei N. Lupas trusts endorse each paper. Same corpus, a different order for every researcher.

1. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
2. The Protein Data Bank.
3. Basic local alignment search tool.
4. Hidden Markov models in computational biology. Applications to protein modeling.
5. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
6. The Pfam protein families database
7. SCOP database in 2004: refinements integrate structure and sequence family data
8. Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical features
9. Protein structure comparison by alignment of distance matrices.
10. Protein homology detection by HMM?CHMM comparison

Their papers

• The HHpred interactive server for protein homology detection and structure prediction (2005) — 3,775 citations
• High‐accuracy protein structure prediction in CASP14 (2021) — 276 citations
• A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core. (2017) — 2,250 citations
• CLANS: a Java application for visualizing protein families based on pairwise similarity (2004) — 737 citations
• AbrB-like transcription factors assume a swapped hairpin fold that is evolutionarily related to double-psi beta barrels. (2005) — 86 citations
• More than the sum of their parts: On the evolution of proteins from peptides (2003) — 258 citations
• The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis (2016) — 375 citations
• The structure of α-helical coiled coils (2005) — 574 citations
• Protein Sequence Analysis Using the MPI Bioinformatics Toolkit (2020) — 681 citations
• TPRpred: a tool for prediction of TPR-, PPR- and SEL1-like repeats from protein sequences (2007) — 233 citations
• Cradle-loop barrels and the concept of metafolds in protein classification by natural descent. (2008) — 64 citations
• The MPI Bioinformatics Toolkit for protein sequence analysis (2006) — 291 citations
• Comparative analysis of coiled-coil prediction methods. (2006) — 160 citations
• HHsenser: exhaustive transitive profile search using HMM–HMM comparison (2006) — 85 citations
• The breakthrough in protein structure prediction (2021) — 45 citations
• An Interface-Driven Design Strategy Yields a Novel, Corrugated Protein Architecture. (2018) — 11 citations
• Structural Dynamics of the Cereblon Ligand Binding Domain (2015) — 30 citations
• The GD box: A widespread noncontiguous supersecondary structural element (2009) — 18 citations
• Evolution of the β‐propeller fold (2008) — 100 citations
• Prediction and analysis of coiled-coil structures. (1996)