Locus effects and sources of error in noninvasive genotyping

By J. C. Buchan, Elizabeth A. Archie, R. C. V. Horn, Cynthia J. Moss, S. Alberts. 2005

96 citations recorded by the source corpus.

Subfields: Ecological Modeling, Ecology, Genetics

View Paper: https://www.semanticscholar.org/paper/b6514fd81e9d366ffc894e47889a6385c850d1f1

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Ecological Modeling

In Ecology

In Genetics

Citations in the corpus

Social relationships among adult female baboons (papio cynocephalus) I. Variation in the strength of social bonds (2006, methodology): “Our methods for genetic analysis and identification of paternal kin are described in detail elsewhere (Alberts et al. 2006; Buchan et al. 2003, 2005; Smith et al. 2003).”
Mitigating Scoring Errors in Microsatellite Data from Wild Populations (2006, background): “While investigating the source of errors in noninvasive samples, Buchan et al . (2005) found that allelic dropout increased with allele size and that rates of dropout remained high at some loci even with increased DNA concentration, indicating that technical limitations in amplifying large alleles”
Noninvasive population genetics: a review of sample source, diet, fragment length and microsatellite motif effects on amplification success and genotyping error rates (2006, background): “In other studies, amplicon size has been shown to impact amplification success as well as allelic dropout rate (Morin et al. 2001; Buchan et al. 2005; Hoffman and Amos 2005).”
Sexual selection in wild baboons: from mating opportunities to paternity success (2006, methodology): “Methods for genetic analysis and paternity determination are described in detail in the Appendix (see also Buchan et al. 2003, 2005).”
Age, musth and paternity success in wild male African elephants, Loxodonta africana (2007, methodology): “In the one instance where tissue and faeces did not match (mismatched at 5 of 8 loci), we assumed that the mismatch was due to misidentification of a faecal sample in the field, and we used only the tissue sample (see Buchan et al. 2005 ).”
Current trends in microsatellite genotyping (2011, background): “However, SSRs with numerous repeats have also some drawbacks, such as increased allele dropout (Kirov et al. 2000; Buchan et al. 2005) and increased stutter (Hoffman & Amos 2005).”
Effects of time and rainfall on PCR success using DNA extracted from deer fecal pellets (2010, background): “Problems may occur when fecal samples yield low quantity and quality DNA, such as that available on the surface of fecal pellets exposed to the environment (Ball et al. 2007; Buchan et al. 2005; Waits and Paetkau 2005).”