Privateer: software for the conformational validation of carbohydrate structures

By J. Agirre, Javier Iglesias-Fernández, C. Rovira, G. Davies, K. Wilson, Kevin Cowtan. 2015

351 citations recorded by the source corpus.

Subfields: Materials Chemistry, Molecular Biology, Organic Chemistry

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Materials Chemistry

1. Jared Adolf-Bryfogle
2. William R. Schief
3. D. Veesler
4. A. Walls
5. Brandon Frenz
6. A. J. Borst
7. M. A. Tortorici
8. Frank DiMaio

In Molecular Biology

1. Jared Adolf-Bryfogle
2. William R. Schief
3. D. Veesler
4. A. Walls
5. M. A. Tortorici
6. Frank DiMaio
7. Andrew T. McGuire
8. Young-Jun Park

Citations in the corpus

• Automatically fixing errors in glycoprotein structures with Rosetta (2018, methodology): “By adding the -ideal_sugars flag, Rosetta only considers the lowest energy ring conformation, typically the only conformation observed in glycans on a protein surface that have only minimal interaction with the protein or other chemical groups (Agirre et al., 2015a).”
• Structure, Function, and Antigenicity of the SARS-CoV-2 Spike Glycoprotein (2020, background): “, 2019) and privateer (Agirre et al., 2015) to validate the stereochemistry of both the protein and glycan components (Table S1).”
• Glycan Shield and Fusion Activation of a Deltacoronavirus Spike Glycoprotein Fine-Tuned for Enteric Infections (2017, neutral): “The quality of the final model was analyzed with Molprobity (75) and Privateer (76).”
• Unexpected Receptor Functional Mimicry Elucidates Activation of Coronavirus Fusion (2020, neutral): “Models were analyzed using MolProbity (Chen et al., 2010) and privateer (Agirre et al., 2015).”