Orthologs, Paralogs, and Evolutionary Genomics 1

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Proteinortho: Detection of (Co-)orthologs in large-scale analysis (2011, neutral): “Such genes are known as co-orthologs [10].”
Assessing Performance of Orthology Detection Strategies Applied to Eukaryotic Genomes (2007, methodology): “Orthologs typically retain similar domain architecture and occupy the same functional niche following speciation, while (functionally redundant) paralogs are likely to diverge with new functions through point mutations and domain recombinations [3,4].”
Economic Importance, Breeding Objectives and Achievements (2011, background): “These concepts are essential for comparing maps between species (Gogarten and Olendzenski 1999; Koonin 2005; Theissen 2005; Pelgas et al. 2006).”