Bsoft: image processing and molecular modeling for electron microscopy.

By J. Bernard Heymann, D. Belnap. Journal of Structural Biology, 2007

534 citations recorded by the source corpus.

Subfields: Materials Chemistry, Structural Biology, Surfaces, Coatings and Films

View Paper: https://www.semanticscholar.org/paper/af55abb1fb6b8a24193291d346300a6eb5e93c89

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Materials Chemistry

1. Sjors H. W. Scheres
2. Dari Kimanius
3. Erik Lindahl
4. Björn Forsberg
5. Alasdair C. Steven
6. Giovanni Cardone
7. Wah Chiu
8. J. Bernard Heymann

In Structural Biology

1. Dari Kimanius
2. Erik Lindahl
3. Björn Forsberg
4. Sjors H. W. Scheres
5. Alasdair C. Steven
6. Giovanni Cardone
7. Wah Chiu
8. J. Bernard Heymann

In Surfaces, Coatings and Films

1. Dari Kimanius
2. Erik Lindahl
3. Björn Forsberg
4. Sjors H. W. Scheres
5. Alasdair C. Steven
6. Giovanni Cardone
7. J. Bernard Heymann
8. J. Bartho

Citations in the corpus

• RELION: Implementation of a Bayesian approach to cryo-EM structure determination (2012, result): “, 2004) and BSOFT (Heymann and Belnap, 2007), and all Euler angle and symmetry conventions are in accordance with the 3DEM standard conventions (Heymann et al.”
• Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2 (2016, background): “…done by a wide range of different image processing programs, such as SPIDER ( Frank et al., 1981 , 1996 ), IMAGIC ( van Heel et al., 1996 ), BSOFT ( Heymann and Belnap, 2007 ), EMAN2 ( Tang et al., 2007 ), SPARX ( Hohn et al., 2007 ), FREALIGN ( Grigor-ieff, 2007 ), XMIPP ( Scheres et al., 2008 ),…”
• Three-dimensional Structure of the Toxin-delivery Particle Antifeeding Prophage of Serratia entomophila * (2013, methodology): “All further image processing for both Afp and TBC particles was done in Bsoft (22).”
• Two Patched molecules engage distinct sites on Hedgehog yielding a signaling-competent complex (2018, unknown): “Human SHH-N (24-197) was constructed into pcDNA3.”
• One number does not fit all: mapping local variations in resolution in cryo-EM reconstructions (2013, methodology): “The last two operations were performed with bmask and bfilter in Bsoft (Heymann and Belnap, 2007).”
• Insights into Head-Tailed Viruses Infecting Extremely Halophilic Archaea (2013, unknown): “Finally, the corrected maps were filtered back to the original resolution by using Bsoft (53).”
• Sharpening high resolution information in single particle electron cryomicroscopy. (2008, unknown): “The program accepts 3D maps in any format common in EM (e.g. MRC, Spider, PIF, EM, Xmipp, etc.) by using the Bsoft library (Heymann and Belnap, 2007).”
• Quantitative analysis of cryo-EM density map segmentation by watershed and scale-space filtering, and fitting of structures by alignment to regions (2010, background): “Software tools for interactive segmentation of cryo-EM density maps allow users to trace out regions interactively (Goddard et al., 2007; Heymann and Belnap, 2007; Pruggnaller et al., 2008).”