The FlyBase database of the Drosophila genome projects and community literature.

By W. Gelbart. Nucleic Acids Research, 2003

608 citations recorded by the source corpus.

Subfields: Immunology, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/ab47f4149913e380dc0cd552294a11aeac2581e7

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Immunology

1. Rodrigo Lopez
2. Bonnie Berger
3. David Binns
4. Huaiyu Mi
5. Paul D. Thomas
6. Rong Lei
7. Rolf Apweiler
8. Jinbo Xu

In Molecular Biology

1. Huaiyu Mi
2. Paul D. Thomas
3. Anushya Muruganujan
4. Kuo-Chen Chou
5. Haiyuan Yu
6. Bonnie Berger
7. Jinbo Xu
8. Suzanna Lewis

Citations in the corpus

• PANTHER Pathway: an ontology-based pathway database coupled with data analysis tools (2009, background): “The supported identifiers include gene identifiers (Entrez Gene (Pruitt et al. 2001) for human, mouse and rat, or FlyBase (FlyBase Consortium 2003; Wilson et al. 2008) FBgn numbers for Drosophila), protein identifiers (RefSeq or FlyBase), and gene symbols.”
• The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro. (2003, background): “…new terms when necessary, thus extending the scope of the GO ontologies beyond those terms required to describe the proteins of the model organism databases, SGD (Dwight et al. 2002), FlyBase (The FlyBase Consortium 2002), and MGD (Blake et al. 2002), the founding members of the GO consortium”
• Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads (2014, methodology): “We then used TopHat [19,20] (version 2.0.10) to align the processed reads to the reference genome of D. simulans [21] (dsim revision 1.4).”
• Apollo: a community resource for genome annotation editing (2009, background): “Contact: elee@berkeleybop.org”
• Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs. (2004, background): “Our database also links each protein to an external Web resource such as SGD (Christie et al. 2004), WormBase (Harris et al. 2004), or FlyBase (The FlyBase Consortium 2002).”
• UniProt archive (2004, methodology): “New and updated protein sequences are loaded daily from public databases including SWISS-PROT, TrEMBL, PIR-PSD, EMBL (Stoesser et al., 2003), Ensembl (Hubbard et al., 2002), PDB (Westbrook et al., 2003), IPI (http://www.ebi.ac.uk/IPI), RefSeq (Pruitt and Maglott, 2001), FlyBase (The FlyBase Consorti”